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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 2580next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 VFG000851(gi:2576413) (aafA) major fimbrial subunit of aggregative adherence fimbria II AafA [AAFs (VF0214)] [Escherichia coli str. 042] 160 HGM_OVER 9-153 -7.040 PB017610 Q11T14_CYTH3/22-188 PB017610; Pfam-B_17610;
2 VFG000854(gi:4689214) (aafB) invasin homolog AafB [AAFs (VF0214)] [Escherichia coli str. 042] 146 HGM_OVER 1-139 -9.370 18  PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]
3 VFG000853(gi:4689215) (aafC) aggregative adherence fimbria II usher protein AafC [AAFs (VF0214)] [Escherichia coli str. 042] 856 HGM_OVER 687-813 -3.550 15  PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]
4 VFG000852(gi:4596718) (aafD) chaperone protein AafD [AAFs (VF0214)] [Escherichia coli str. 042] 241 HGM_OVER 43-172 -5.700 15  HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;
5 VFG000865(gi:387604907) (aap/aspU) Dispersin [Dispersin (VF0215)] [Escherichia coli O44:H18 042] 116 HGM_OVER 1-116 -8.610 17  PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;
6 VFG044024(gi:169639785) (ACA60977) alpha-toxin [alpha-toxin (septicum) (VF0416)] [Clostridium septicum str. NH2] 443 HGM_OVER 127-283 -7.940 10  PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;
7 VFG000110(gi:15641470) (ace) accessory cholera enterotoxin [Ace (VF0130)] [Vibrio cholerae O1 biovar El Tor str. N16961] 97 HGM_OVER 43-93 -4.470 11  PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;
8 VFG002166(gi:29375675) (ace) collagen adhesin protein [Ace (VF0355)] [Enterococcus faecalis V583] 674 HGM_OVER 1-315 -6.740 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
9 VFG000103(gi:15640861) (acfA) accessory colonization factor AcfA [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 215 HGM_OVER 1-52 -8.710 11  PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)
10 VFG000104(gi:15640857) (acfB) accessory colonization factor AcfB [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 626 HGM_OVER 393-589 -5.850 PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]
11 VFG000105(gi:15640858) (acfC) accessory colonization factor AcfC [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 256 HGM_OVER 1-123 -5.310 HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
12 VFG000106(gi:15640862) (acfD) accessory colonization factor AcfD [ACF (VF0127)] [Vibrio cholerae O1 biovar El Tor str. N16961] 1520 HGM_OVER 1-537 -6.900 PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;
13 VFG043518(gi:29134931) (acm) collagen adhesin precursor Acm [Acm (VF0419)] [Enterococcus faecium str. TX2555] 721 HGM_OVER 1-118 -9.720 11  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
1-208 -9.510 10  PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]
14 VFG005770(gi:22536832) (acpC) acyl carrier protein AcpC [Beta-hemolysin/cytolysin (CVF171)] [Streptococcus agalactiae 2603V/R] 101 HGM_OVER 38-92 -3.050 PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138;
15 VFG011429(gi:17987394) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 93 HGM_OVER 2-65 -3.110 17  HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;
16 VFG011430(gi:17987758) (acpXL) acyl carrier protein [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M] 78 HGM_OVER 1-76 -2.630 11  PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;
17 VFG000068(gi:16802250) (actA) actin-assembly inducing protein precursor [ActA (VF0066)] [Listeria monocytogenes EGD-e] 639 HGM_OVER 3-107 -8.250 14  HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;
18 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315] 772 HGM_OVER 198-434 -2.330 PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;
19 VFG042423(gi:218921796) (afaA) fimbrial major subunit AfaA [Afimbrial adhesin, AFA-I, mannose-resistant adhesin (AI010)] [Escherichia coli O25b:H4 str. FV9863] 101 HGM_OVER 10-101 -4.130 11  HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;
20 VFG042441(gi:13236678) (afaA-VIII) AfaA-VIII [Afimbrial adhesin, AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] 127 HGM_OVER 32-123 -5.360 HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;


FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.