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Filter & download results: Zscore <   Identity ≥(%)   Query residues aligned ≥(%)   Max number of homologs:   Template Database:

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Shows best template from each database, and all templates with significant scores covering different query fragments

Results: 1-20 of 4334next page >

# Query Length Result vs. Range Score %id Covered by template(s)
1 gi|16082692|ref|NP_395138.1| putative transposase (YPCD1.01) [Yersinia pestis CO92] 340 COG0516 1-340 -114.000 41  [L] COG4584 Transposase and inactivated derivatives
2 gi|16082693|ref|NP_395139.1| transposase/IS protein (YPCD1.02) [Yersinia pestis CO92] 259 COG0516 54-250 -29.400 19  [L] COG1484 DNA replication protein
3 gi|16082696|ref|NP_395142.1| secretion chaperone (YPCD1.05c) [Yersinia pestis CO92] 130 COG0516 6-123 -10.000 [S] COG5465 Uncharacterized conserved protein
4 gi|16082697|ref|NP_395143.1| putative outer membrane virulence protein (YPCD1.06) [Yersinia pestis CO92] 219 COG0516 126-217 -6.640 [S] COG4718 Phage-related protein
5 gi|16082698|ref|NP_395144.1| hypothetical protein (YPCD1.07) [Yersinia pestis CO92] 98 COG0516 39-98 -7.090 20  [S] COG4713 Predicted membrane protein
6 gi|16082699|ref|NP_395145.1| hypothetical protein (YPCD1.08c) [Yersinia pestis CO92] 99 COG0516 2-94 -62.100 31  [R] COG3668 Plasmid stabilization system protein
7 gi|40548796|ref|NP_395146.2| hypothetical protein (YPCD1.09c) [Yersinia pestis CO92] 80 COG0516 1-78 -38.800 34  [K] COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
8 gi|16082702|ref|NP_395148.1| plasmid-partitioning protein (YPCD1.12c) [Yersinia pestis CO92] 320 COG0516 2-156 -20.700 [L] KOG3388 Predicted transcription regulator/nuclease, contains ParB domain
61-320 -35.900 11  [K] COG1475 Predicted transcriptional regulators
9 gi|16082703|ref|NP_395149.1| plasmid-partitioning protein SopA (YPCD1.13c) [Yersinia pestis CO92] 388 COG0516 66-387 -23.700 16  [D] COG0455 ATPases involved in chromosome partitioning
105-374 -60.600 19  [D] COG1192 ATPases involved in chromosome partitioning
10 gi|40548797|ref|NP_954989.1| hypothetical protein (YPCD1.14n) [Yersinia pestis CO92] 65 COG0516 1-65 -18.800 20  [L] COG2801 Transposase and inactivated derivatives
11 gi|16082705|ref|NP_395151.1| hypothetical protein (YPCD1.15c) [Yersinia pestis CO92] 152 COG0516 1-152 -33.100 17  [L] COG2801 Transposase and inactivated derivatives
12 gi|16082706|ref|NP_395152.1| hypothetical protein (YPCD1.16c) [Yersinia pestis CO92] 107 COG0516 7-107 -49.700 28  [L] COG2963 Transposase and inactivated derivatives
13 gi|16082708|ref|NP_395154.1| Yop targeting protein (YPCD1.19c) [Yersinia pestis CO92] 182 COG0516 38-156 -5.990 12  [S] COG3205 Predicted membrane protein
14 gi|16082709|ref|NP_395155.1| Yop targeted effector (YPCD1.20) [Yersinia pestis CO92] 322 COG0516 139-290 -9.920 14  [R] COG3271 Predicted double-glycine peptidase
15 gi|16082710|ref|NP_395156.1| YopT chaperone (YPCD1.21) [Yersinia pestis CO92] 132 COG0516 3-127 -5.490 11  [V] COG1787 Predicted endonuclease distantly related to archaeal Holliday junction resolvase and Mrr-like restriction enzymes
16 gi|16082711|ref|NP_395157.1| hypothetical protein (YPCD1.22c) [Yersinia pestis CO92] 129 COG0516 4-127 -6.860 17  [S] COG1584 Predicted membrane protein
17 gi|16082712|ref|NP_395158.1| hypothetical protein (YPCD1.23) [Yersinia pestis CO92] 139 COG0516 5-90 -8.050 12  [TR] KOG4019 Calcineurin-mediated signaling pathway inhibitor DSCR1
18 gi|16082715|ref|NP_395161.1| secreted effector protein (YPCD1.26c) [Yersinia pestis CO92] 409 COG0516 1-409 -39.500 17  [T] KOG4194 Membrane glycoprotein LIG-1
19 gi|16082716|ref|NP_395162.1| secreted effector protein (YPCD1.28c) [Yersinia pestis CO92] 306 COG0516 12-299 -11.800 [S] COG1511 Predicted membrane protein
70-300 -16.100 11  [S] COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain
20 gi|16082717|ref|NP_395163.1| secreted effector protein (YPCD1.29c) [Yersinia pestis CO92] 401 COG0516 1-401 -95.200 100  [S] COG5613 Uncharacterized conserved protein

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.