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Query: TM0013 TM0013 281894 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSLLast
1 -2.960PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  13  132..........................AADCTAYAYASFHEKFILDSV------DYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKA--------------LQDSGKFIPWQVATISIDGRIL.............................................................................................................................. 223
2 -2.800PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  11  140............................MWCDYL-QDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANK--SKFFGLVITDEEIIVKVLESIDEYYNEGKT--------QGICVFGSGYYKKADTLILSARI-----DEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKANLIRERMKA................................... 322
3 -2.450PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  73LSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEVDSIWLTRDGGNLRAIGNIRVELDGQTVLDTPVQSLVDGQLGAPFVWPLVANA-----------------------GESPGGDYIKVPMP----------YRRSMRISVESHLEAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGP.............................. 273
4 -2.410PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  1..............................................................MATQAIDATIFASSHPDIAKRTSISGLLISCVMLLIGILSFASTFELEDKSSTVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPTGSIA--KERSIFFDLKHMDKLTDNSGSFSADSKIKSEASGNIRMDVILSADNKFAAVQLFQFVPYTYQPVTAVH--YFTNDAAAAVAAFLTK.............. 175
5 -2.370HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  10  3.............................................................................................................................................YLHARGLF-------HVLLLICNRELLLIGKRK-----DEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQAVESVLGCPIEEEDLPKLIGFLKRQETNGKFFSK.... 123
6 -2.340PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  11  39...........................THATINDVEMKSGAPVLKAGTQSDLNELVTGLSQSQSLSVPSWIDTTMLALGAGRMIAMFFKTSSFTKDTFEAQGQLPTPGLVWLVMQGALYVYAYKGSGRPDKETKLYQAPFFNVWSQGKVCTPHMWVDAFFGSNFTHPNFKEKDRLVKGVCPIDFWKAMPVFEGRLVDLPLTVADLLAPDLNQKLGNIDRAAG............................... 263
7 -2.330PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  187............................QAGKFTVEKARSNEKLNR--EHVIKYAELELASLAETVDLSKLGNDYEPLNGTLTDDQIQAACNAANNFLGVNVT----------------------------------------------LKLNGEDAGKVDGSSVLQWISFADPANPTLDTSQISSWAAELANGFNTVGS--TRWWTRADGKQCAVEGGDFGSIDSSSLAKQVEDAINN.............. 349
8 -2.210HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  14  7..................................ILNKNPLMFFDRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIR-----------------AKEGMGGLILEGTEAKILSDQFYAYLSGCMFNDPVGMAIYAELHYMMSS............................................................................................ 119
9 -2.050PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  55.................................SLGRNARLLMVIPMDAET-RLLRPQAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERVVTDSQAIDVVHPWTLDRSSGRPLVPITTFSI-AMAYQQNGGRLDPFVEGLEALETLQDGDRVLISNDIGGGKKLQIEHAFGREFPELESGGMDGLKLAIMIDAQKMQQRMKDLHEAGVPVT--NYGVFFSWAAWPDALR.................. 302
10 -2.010PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;  ali follow..  10  18................................FCVMEEFDALLSNIIDSTLGPRTKTQYSEIFRSLMCVYFCGGSCVEDISTHLMSHLSFHPVLRSCSADTILRAIKELTVPNI--TYTSSVSGKSYDFNMADRMNELLRQGTHIYRRI........................................................................................................ 135

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.