current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: TM0013 TM0013 281894 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSLLast
1 -5.560sp|Q8N201|INT1_HUMAN Integrator complex subunit 1 OS=Homo sapiens GN=INTS1 PE=1 SV=2 (Range: 113-266)  ali follow..  15  1.................................VPIEVLPTVLLDEIEAAELEGNDDRIEGVL--GAVKQLKVTRAKPDSTLYLSLMYLAKIKPNIFATEGVIEALCSLLRRDASINFK-AKGNSLVSVLACNLLMAAYEEDENWPEIFVK-------VYIEDSLGE...................................................................................... 125
2 -4.390tr|C9J2F8|C9J2F8_HUMAN HCG22882, isoform CRA_a OS=Homo sapiens GN=PSMG4 PE=4 SV=1 (Range: 1-102)  ali follow..  27...............................HFHVMRLTDSLFLWVGATPHLRNLAVAMCSRYDSIPVSTSLLGDTSDTTSTGLAQRLGLGGKTGLACE.......................................................................................................................................................... 94
3 -4.370sp|Q96QF0|RAB3I_HUMAN Rab-3A-interacting protein OS=Homo sapiens GN=RAB3IP PE=1 SV=1 (Range: 311-476)  ali follow..  10  3...........................................ADLSLYNEFRLWKDEPTMDRTCPFLDKIYQEDIFPSKSELASAVLEAVENNTLSIEP-----VGLQPIRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYI---RYRITSVCNFFT--------------------YIRYIQQGLVKQQDVDQMFWEVMQ-LRKEMSLAKLGYF............................. 162
4 -4.320sp|Q4ZG55|GREB1_HUMAN Protein GREB1 OS=Homo sapiens GN=GREB1 PE=2 SV=1 (Range: 72-212)  ali follow..  12  8.......................................................................FQLHPLPEGCCTTDGFCQAGKDLRLVSISN-----------------------EPMDVPAGFLLVGVKSPSL--PDHLLVCAVDKRFLFSGNCVGC-----------------KKGFCYFTEFSNHINLKLTTQPKKQKHLKYYLVRNAQGTLTKGPLI....................... 136
5 -4.320sp|Q9BRB3|PIGQ_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q OS=Homo sapiens GN=PIGQ PE=1 SV=3 (Range: 1-151)  ali follow..  10  13......................STDSGLLVGRWVPEQSSAVVLAVLHFPFIPIQVKQLLAQVRQASQVGVAVLCHCRQEPEESLGRFLESL--GAVFPHEPWLRLCRERGGTFWSCEATHRQAPTAPGAPGEDQVMLI-------------FYDQRQVLLS............................................................................................ 139
6 -4.280sp|Q8TB22|SPT20_HUMAN Spermatogenesis-associated protein 20 OS=Homo sapiens GN=SPATA20 PE=2 SV=3 (Range: 683-786)  ali follow..  10  9...........................VRALSAQQQTLKQIVICGDRQAKDTKALVQCVHSVYIPNKV----LILADGDPSSFLSRQLPFLSTLRRLEDQATAYVCENQ................................................................................................................................................ 86
7 -4.250sp|Q9C091|GRB1L_HUMAN GREB1-like protein OS=Homo sapiens GN=GREB1L PE=2 SV=2 (Range: 115-251)  ali follow..  13  21............................................................................................................................EQIDIPAGFLLVGAKSPNL--PEHILVCAVDKRFLFSGNCIGC-----------------ERGFRYFTEFSNHINLKLTTQPKKQKHLKYYLVRSSQGVLSKGPLI....................... 119
8 -4.120sp|Q9NTG1|PKDRE_HUMAN Polycystic kidney disease and receptor for egg jelly-related protein OS=Homo sapiens GN=PKDREJ PE=2 SV=2 (Range: 804-1125)  ali follow..  7..................................ILMSLSNILKMTSPHQVVKDPFYVIESLSD------TILANKVPGNKTTS-----RTPNFNMYVKKVEKWGINQLFRNEKHCRNCFYPTLNVSSVPGLSANGPISTMFCDFTNDLFPWLNDQENTSVEVSGFRMTGVADNGSVLEITPDVAEVY................................................................. 150
9 -3.970sp|P21359|NF1_HUMAN Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2 (Range: 2603-2744)  ali follow..  18  1...........................VLLDEEVLTDPKIQALLDEFDQRILYEYLAEASVVFPDSKINTLLSLCQDPNLLNPIHGIVQSVVYHEESPPQYQTSYLQSFG............................................................................................................................................... 105
10 -3.930sp|Q6AHZ1|Z518A_HUMAN Zinc finger protein 518A OS=Homo sapiens GN=ZNF518A PE=1 SV=2 (Range: 1315-1397)  ali follow..  15  34......................................................................VVLNHPDAD-APEVVSVMKTIAKLKVSLSKRTINALLK................................................................................................................................................. 75

FFAS is supported by the NIH grant R01-GM087218-01
1 0 8 9 4 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.