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Query: TM0013 TM0013 281894 Purified-2001-08-24, from JCSG0516

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNAACKKWVDMVSKKKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSLLast
1 -77.400d2q9ua1 d.157.1.3 (A:4-253) Nitric oxide reductase N-terminal domain {Giardia intestinalis [TaxId: 5741]}  ali model 3D-neighbors follow..  19  10MIPGVYWVGIVDWMVRIFHG-YHTDEGSSYNSYFIDD-ECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLKILYGME-KATWLIVDDKYTLKI-GKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMLFKEYTANILGLFSAQMRKALEVASTVEIKYILSAHGVSWRGDAMGLAIAEYDRWSKG.......... 249
2 -76.400d2ohha1 d.157.1.0 (A:1-254) automated matches {Methanothermobacter thermautotrophicus [TaxId: 145262]}  ali model 3D-neighbors follow..  18  12......VYWTGVLDWDLRNYHGYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDAVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDL-GGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMAARKFYANLITPLSKLVLKKFDEVKELGIQMIAPSHGQIWTDP--MKIIEAYTGWATGM......... 254
3 -75.200d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  17  5IIDGFHLVGAIDWNSRDFHGYTLSPMGTTYNAYLVED-EKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLGQKAMESHFHYK-DWPVQVVKHGETLSL-GKRTVTFYETRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLEAMREYYANIVNPYAPQTLKAIETLVGVAPEFICPDHGVIFRGDQCTFAVQKYVEYAE........... 247
4 -71.200d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  11DDPEIYVLRIDDDRIRYFEAVWEIPEGISYNAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIHDVEIIASNFGKRLLEGFYGIKD---VTVVKDGEEREI-GGKKFKFVMTPWLHWPDTMVTY--LDGILFSCDVGGGYLLPEILDDSNESVVERYHVTKYIVTVIGHYKNYILEGAEKLSSLKIKALLPGHGLIWKKD-PQRLLNHYVSVAKG.......... 249
5 -39.800d2vw8a1 d.157.1.14 (A:1-298) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  17  21............................QVPVFLLRLGEASALVEGGISRDAELVWADLCRWADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERVRAVADGEWLELGPRHRLQVIEAH--HSDDHVVFYDVRRRRLFCGDALGEFDEAEGVWRPLVFDDM----------------EAYLESLERLQRLPTLQLIPGHGGLLRGRLAADGAE.................. 235
6 -33.800d4d1ta_ d.157.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  12..GEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAA--GVATYTSPLTRQLAEAAGNEVPAHSLKALSSSGDVVRFGPVEVFYPGA---HSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPAT------------------IKRIQQREAEVVIPGHGLPGGLELLQHTTNVVKT.............. 228
7 -32.000d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}  ali model 3D-neighbors follow..  12  1...DVKIEKLKDNLYVYTTYNTFNGTKYAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKI--GAKTYSTKMTDSILAKENKPRAQYTF---DNNKSFKV-GKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKF-----------------GAQYVVAGHDDWKDQRSIQHTLDLINEYQ............ 216
8 -32.000d4c1ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  16  9..GTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKER--GIKAHSTALTAELAKKNGYEEPLGDL---QTVTNLKF-GNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRY----------------RNINAVVPGHGEVGDKGLLLHTLDLLK............... 222
9 -30.800d1a7ta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]}  ali model 3D-neighbors follow..  13  4ISDDISITQLSDKVYTYVSLAEIEGWGVPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQR--KGVQSYANQMTIDLAKEKGLPVPEHGF---TDSLTVSL-DGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKF-----------------SARYVVPGHGNYGGTELIEHTKQIVNQYIEST......... 226
10 -30.300d2ynta1 d.157.1.0 (A:37-295) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  4..KPLEVIKIEDGVYLHTSFKNIEGYGVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRG-YQVMASISTHSHEDRTAGIKLLNS--KSIPTYTSELTKKLLAREGKPVPTHYF----KDDEFTL-GNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGLGYVGDASISSWADSIKNIVSKK----------------YPIQMVVPGHGKVGSSDILDHTIDLAESAS............ 219
11 -30.300d4hl2a1 d.157.1.0 (A:31-270) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  13  17..GDLVFRQLAPNVWQHTSYLDMPGFGVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA--GIATYANALSNQLAPQEGMVAAQHSLTFAANEPATAPFGPLKVFYPGP---HTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAF-----------------KASMIVMSHSAPDSRAAITHTARMADKLR............ 240
12 -30.000d2fhxa_ d.157.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  21.....................VTDRDFYSSNVLVAKMLDTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKM--GAETWSSDLTKQLRLEENKKDRIKAAEFLKQGKVFSF-SNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCM---IKPKELGYLGDANVKAWPDS------------------ARRLKKFDAKIVIPGHGEWGGPEMVNKTIKVAEKAVGEMRL....... 245
13 -28.000d4ax1b_ d.157.1.0 (B:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  11  32.............................ISALLVTSDAGHILVDAATPQAGPQILANIRALFRPEDVRAIVFSHEHFDHAGSLAELQKAT-GAPVYARAPAIDTLKRGLPDRTDANIVTLADDGVVSV-GPLALTAVASP--HTPGGTSWTGDDCRQMVYADSLTAISDDVFRYSDDAAHPGYLAA--------------FRNTLARVAALDCDILVTPHPPLMDTTACRRYAQGARQ.............. 257
14 -27.500d3ioga_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}  ali model 3D-neighbors follow..  14  15.....................VEDNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSI--GAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCIL-------------------------KEKLGNLSFADVKAYPQTLERLPIKTVIGGHDSPLHGELIDHYEALIKAAPQS.......... 227
15 -27.100d2aioa_ d.157.1.1 (A:) automated matches {Stenotrophomonas maltophilia [TaxId: 40324]}  ali model 3D-neighbors follow..  15  36............................DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARVTPRDLRLILLSHAHADHAGPVAELKRRT-GAKVAANAESAVLLARGGSDDLHNADRIVMDGEVITV-GGIVFTAHFMA--HTPGSTAWTWTDTRIAYADSLSAPGYQLQGNPRYPHLIEDYRRS------------------FATVRALPCDVLLTPHPGASN........................... 229
16 -26.700d3m8ta_ d.157.1.1 (A:) automated matches {Bradyrhizobium japonicum [TaxId: 224911]}  ali model 3D-neighbors follow..  16  23............................GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLFKVADIKLILNTHAHLDHTGGFAEIKKET-GAQLVAGERDKPLLEGGYYPGDEKVDRAVKEGDRVTL-GDTTLTAHATP--HSPGCTSWEMTVKEVLFFCSGTVALNRLVGQPTYAGIVDDYRAT------------------FAKAKAMKIDVLLGPHPEV............................. 214
17 -26.300d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}  ali model 3D-neighbors follow..  13  23............................DLASYLIVTPRGNILINSDLEANVPMIKASIKKLFKFSDTKILLISHAHFDHAAGSELIKQQT-KAKYMVMDEDVSVILSGGKSDFHTVDKVLHDGERVEL-GGTVLTAHLTP--HTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDY-----------KHSIKVLESMRCDIFLGSHAGM............................. 217
18 -25.900d5aeba_ d.157.1.0 (A:) automated matches {Uncultured bacterium [TaxId: 506514]}  ali model 3D-neighbors follow..  13  30...........................YDLACYLITTKQGNIIVNTGLAASALQIKNNIKALFKLTDTKILLTTQAHYDHLGAMAEIKKIT-GAKLMADEGDATVMADGGSSDYAIADRLLHDKDTIQL-GDTKLVMLHHP--HTKGSCSFLFDTKRILIANMPTIVIEKKFSE-----------------VSSYPGIAKDYAYTLQAMKNLSFDIWVASHAS.............................. 223
19 -25.000d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}  ali model 3D-neighbors follow..  13  15.....................FNPARNIDFNGFAWIRPEGNILIDPVALS------HDWKHLESLGGVVWIVLTNS--DHVRSAKEIADQT-YTKIAGPVAEKENFP-------IYCDRWLSDGDELVPG----LKVMELQGSKTPGELALLLE-ETTLITGDLV---------------RAYRAGGLEILPDEKLMNKQKVVASVRRLAALKVEAVLVGDGWSVFRDGRDRLKELVATLA............ 200
20 -24.500d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  21...........................HFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELISPDDITDVLFTHVHLDHIFNSVLF----ENATFYVHEVYKTKNYLSFGTIVGRIYSISSWKNVVLLKGEESVKVFHTP--HAREHLSFLENAGRVLITGDITPN-------------------RLSYYDIIKGYGSVQVKNFLDRVGRID--LLVFPHDAPLKPE......................... 206
21 -17.700d4le6a_ d.157.1.0 (A:) automated matches {Pseudomonas pseudoalcaligenes [TaxId: 330]}  ali model 3D-neighbors follow..  18  63...........................TAVNAYLINTGDNLVLIDTGAAQCFGPTLGVVQTNLQPEQVDTVLLTHLHPDHACGLVN-SPAYPNATVEVPQAEAEFMQGMFKMAQQAVAPYAKMNKLKPYKTEGEVSLVASP--HTPGSYLFKSGGQSLLVWGDILLNHAVQFAKPEVVFEFDVDSDQARQSRQRILAEAATDKLWV-----AGAHLPFPGLGHVRKEAQGYAWV................... 289
22 -16.900d3ieka_ d.157.1.10 (A:) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  14  10.........................REVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLVLEDALKVMDEPFFGPEDVEEALGHLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSLPPLADLVLAEGTYPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVLYTHGHRLPRAPIYLDSPMAG 255
23 -16.800d4zo2a_ d.157.1.0 (A:) automated matches {Chryseobacterium sp. [TaxId: 878220]}  ali model 3D-neighbors follow..  14  56...........................MAINILLVKTKEKLILMDTGMGIFADERTGFLLKSLSAHDITDIFLSHAHPDHIGGVVD-KLVFPNASIFISKIEHDF-ASIKDFNNSALKAHPERLNQIIPALQNILKAIQPKL-HTPGVTTISSGNEKLMYVADLIHSDVILFPHPDWGFSGDTDLDIATASRKKFLK-----QLADTKARAFTSHLPWPGLGFTKVKAPGFEWI................... 287
24 -16.400d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}  ali model 3D-neighbors follow..  11  13.......................PEAGEATSGYLFEHDGFRLLVDCGSG-----VLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQGQLPELPIYGHTFDENGFHSLTHEPHTKGIPY-NPEETLQI-GPFSISFLKTVHPVTCFAMRITAGNDIVVYSADSFIPFTKDADLFICECNMYAHQEAAKAGHMNSTEVASI-------AKDANVKELLLTH................................ 211
25 -16.100d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  14...............................MYLVIDDEEAAIVDPVQPQKVVDAARKHG------KLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDDRIGALTH-----------KITHLSTLQV-GSLNVKCLATP--HTSGHICYFGSEPPAVFTGDTLGKFYEGTADEMCKA--HEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMR.................. 226
26 -14.700d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  13  15................................WVLTNDERCVIVDPGEAAPVLKAIAEHK------MPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAE----------TQDKGATHLVGDGDTIRVLG-EKFTLFATP--HTLGHVCYF--SRPYLFCGDTLSQMYQSLMKINSLPDDTLICCAHEYFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLR.................. 218
27 -14.200d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  14  13............................GSDAIILESNGHFAMVDTGEDYDFPDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELKKIWDDNKIYLGGDLDNVHGAEDKYGPLIGKVDTNKSNTKDFIKNLSPKNGVDSEYVNWLKERGIERIKDYDATVF............................ 286
28 -12.800d2i7va_ d.157.1.10 (A:) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  15.........................QEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKT-KGRTFMTHATKAIYRKVSNISADDMLYTETD-HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ----MAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDI--RGLIPVF-ALGRAQELLLILDEYWQ.............. 252
29 -12.500d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  16  2....................................................NRLVPELKDLYDPRQHTAVFLSHAHLDHSRMINYLDPAVP---LYTLKETKMILNPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDL......................................................................................... 135
30 -10.600d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11.........................GSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWKVIPEIDVIILSQPTIECLGAHSLLYYNFTRIQVYATLPVINLSAGVIGPYDTNKLDLEDIEISFDHIDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKG--SVIIPVD-MSGKFLDLFTQVHEL................ 264
31 -10.500d2e7ya_ d.157.1.7 (A:) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  7..........................SKALFSTWIYYSPERILFDAGEG-------VSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIEKPLDVFYPEGNRAVEEYTEFIKRANNVHPLKEGERVFLRNAGGFKRYVQPF-HGRDFVTEEYHKKVLTISGDS-PEEIRGTELLIHECTFLDARDRRYKNH-------AAIDEVMESVKAAGVKKVILYHISTRYIRQLKSVIKKYREEMPDVEIL...... 270

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]