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Query: 1sml_A mol:protein length:269 PROTEIN (PENICILLINASE), from PDB0516

Results of FFAS03 search in JCSG0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AEVPLPQLRAYTVDASWLQPMAPLQIADHTWQIGTEDLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKALTCKAYADAAEQKFDGQLAKETAGARLast
1 -47.500C.KS20803A NP_372069.1 423895 Purified-2012-05-01  ali follow..  16  4............................SSLTLGLVDTNTYFIENDKAVILIDPS--GESEKIIKKLNQINKP---LKAILLTHAHFDHIGAVDDIVDRFDVPVYMHEAEFDFLKDPVKNGADKFKQYGLPIITTPEKLNEGS-TEIEGFKFNVLHTPGHSPGSLTYVFD--EFAVVGDTLFNNGIGRTDLYK-------GDYETLVDSIDKIFELEGDLLFPGHGPYTTVDDEQL-NPFLH........................... 206
2 -46.500TM1295 TM1295 283159 Purified-2004-11-17  ali follow..  18  10........................LLEPNVWHIDYRGDSMYLVVGEEKALLVDTGM--GEGDLKGFVRSITEKP---VEVVLTHAHWDHIMQANQFEK-----VYLNHRDFQIIELFKIN----------VNYENFLNVKEGDRFDLGGRTLEVIEVPGHTPGSIVLLDRENRLLFSGDSVGAGHTWMHLPG-------CLPLREYLKSLKKLKETDFEKIYHGHLTGTQLKPFG-----------PDYLDDLIKAVEGVIDGSLRGE. 217
3 -45.300TM0894 TM0894 282763 PDB-2005-05-26  ali follow..  12  23.....................................STVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFE---NATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEK--VKVFHTPWHAREHLSFLLDTENAG---RVLITGDITPNRLSYYDIIK-GYGSVQVKNFLDRVGRI--DLLVFPHDAPLKPEVKK.................................. 209
4 -43.200TM0607 TM0607 282480 Purified-2001-02-22  ali follow..  12  8.....................................VNIGVVYTENAAVLVDSGLDESVPRKISRLLQK-----PPLYLINTHSHADHCGGNAFLKKRFSTRVFAPKMEKEIIENTVFEPFYLYGAYPAEPSAVDEVIEEGT-ITIESVDLEIVPLSGHSTNQIGVAVD--GVLFCADAVFSEETLRKHR------FVIYNVEKFLETLDFLEKTSYSYYVPSHGEVTRDIGELVEKN-------RKAVENIINAVLEITVNPLSTDE 229
5 -39.900MA16092B NP_808546.1 400112 Cloned-2009-03-24  ali follow..  16  72.....................................SKTALEEAVRGPILVDTGGPWARGALLEALATQGVAPEDVTLVVGTHGHSDHIGNLGLFPE---AALLVSHDFCLPEGLYLPHGLCETQ---------PLILGSG---------LQVWATPGHGGQRDVSVV--VEGTSLGTVVVAGDVFERLGDEDSWQALSEDPVAQQRSRERILSV-ADVVVPGHGAPFRVVRETVKSS.............................. 249
6 -39.800FJ9329A YP_323572.1 370290 PDB-2007-03-23  ali follow..  18  19.................................RNIDFNGFAWIRPEGNILIDP--VALSNHDWKHLESLG----GVVWIVLTNS--DHVRSAKEIADQTYTKIAGPVAEKENF-----------------PIYCDRWLSDGDELVPG---LKVMELQGKTPGELALLLE-ETTLITGDLVRAYRAGGLEIL---PDEKLMNKQKVVASVRRLAALKVEAVLVGDGWSVFRDGRDRLKELVATLA........................ 200
7 -39.400MA16092A NP_981942.1 400061 Selected-2008-12-22  ali follow..  17  68.....................................AEAALEEAARGHILVDTGGPWAREALLGALAGQGVAPGDVTLVVGTNGHSDHIGNLGLFPG---AALLVSHDFCLPGGR-----------------YLPHGLGEGQPLRLGP-GLEVWATPGHGGQRDVSVVVAGTALG---TVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVV-ADVVVPGHGPPFRVLREASQPKTEG........................... 247
8 -37.800TM0681 TM0681 282551 Purified-2001-10-17  ali follow..  14  20.................RGEKMITNLSDRVFVIGTGTSNSVLVCGKKFCVLFDSTFPEKARKIKEFAAEI--LGKEIAVVFNTHYHPDHTFGNEVF-----DRIISHSLTRKSLEEMDEEYIR-KIGVEVSLKFPDETFSERENYRFGDIVVEAVHLGGHTPDSSIFVLKNEKIVICGDLLTTGIHAEIVTD--------SDLFGWIEALSEIEKIRADYFVPGHGKVGTIED----------RNMKDYISKVLRFREGSVKHSELLED 248
9 -36.000MM3808A 13278494 354611 Purified-2003-08-14  ali follow..  13  19.........................LGCNPGPMTLQGTNTYLVGTGSRRILIDTGEPSVPEYISCLKQALVEFDTAIQEILVTHWHSDHSGGIVDICKNINNDTTYCIKKLRRNPQREEIIGN--------GEQQFIYIENGDVVKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTIF-----------EDLYDYMNSLNNLLKIKANIIYPGHGPVIHNAEAK----------ILEYISHRNNREEQIISLFRDNFE 233
10 -35.200MA3808A NP_057111.1 399812 Purified-2009-03-14  ali follow..  14  19.........................LGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGN--------GEQQYVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTV------------EDLYDYMNSLKELLKIKADIIYPGHGPVIHNAEAK----------IQQYISHRNIREQQILTLFRENFE 233
11 -34.400FL10934A YP_165938.1 375728 Purified-2007-06-12  ali follow..  10  2......AKAFASQGDMSEKKISFTEVGEGLYFTAEGDPNSGVIIGDDSVMVVEAQTPRLAQKVIDCIREV--TDKPISHVVLTHYHAVRVLGASAFG---AGQVIMSDTARSMVVERGQERLFEGHESIPGLTWPTTTFSDSMTVYLGKRRVDIMHLRAHTAGDAVIHVPDQNVMFTGDIVEYHSACYCG---------DGHFNDWGNTLDNIAWFDVDAIAPGRGDALVGKEMVNAA-----ENTRDFVQSTYRPAARVAARGGSLKE 259
12 -30.200MA16095A NP_996995.1 400077 Purified-2009-03-13  ali follow..  19  3....................VKVIPVLEDNY--------MYLVIEELTAVAVD---VAVPKRLLEIVGREGVS---LTAVLTTHHHWDHARGNPELARLRGLAVLGADERIFSL---------------------TRRLAHGEELRFGAIHVRCLLTPGHTAGHMSYFLWEDDCPFSGDALSVAGCGS----------LEGSAQQMYQSLAELGTLPPETKVCGH------------EHTLSNLEFAQKVEPCNDHVRAKLSWAKARPL 204
13 -30.000XB5432A 10175883 358570 Crystal|NMR-2005-05-26  ali follow..  14  51.....................................TDPFLIQLDGQNILVESGIGNGRSFLEDDLQSLGLTVADIDAVLMTHLHFDHASGLAKQKEGENAVIYASAREWAEMREPNIRSRNTYWEQNWRPVEQQVVTFEKEQEIIPG--IRMIHTGGHSDGHSIIVIEHEGE----TFIHLADITHAHQNVLWVLAYDDYPMDSIFAKQKWQAFASEWYLFYHDYKYRAIKWNDEGEIVASIERTPTSYK................. 284
14 -29.600FN0013A AFE_0842 378921 Purified-2007-09-27  ali follow..  16  1.........................MSQLLYDNGTHQANQFLIVNNGEGMLLDPGGNLTYKNLLAEMASY-FLPAHLDYVFASHEDPDIVASANGWLLITDAKILIANEWTRFLPH---------CSKGMTAGRVIGIPAQGMRVNLAGQELFVVPAH-HSVGNFQVYDPVSK------ILFSGDLGANLVSGHDHRRYMGGQKVCRLWTNMARGMDIEWIVPQHGASFK....................................... 228
15 -28.900MA16095B NP_081173.1 400254 Purified-2009-05-08  ali follow..  20  14.......................................MYLIIEEHTAVAID---VAVAERLLEIAGREGVS---LTMVLSTHHHWDHTRGNAELAHILPGLAVLGADER----------------------ALTRRLEHGEGLQFGAIHVRCLLTPGHTSGHMSYFLWEDDCPDSPALFSGDALSVAGCGWH----LEDTAQQMYQSLAKLGTLPPETKVCGH------------EHTLSNLEFAQKVEPCNEHVQAKLSWAQERDD 205
16 -27.100TM0013 TM0013 281894 Purified-2001-08-24  ali follow..  15  29....................................QTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEV-VDLSSIRHIFYTHQDPDVTSGILLWLSICNAKIYISSLWVRFLPHFGIYDQK----------RIVPISDKGTKIKLSGNELEILPAH-HSTGNFVLYDPVAK------ILFSGDIGAAVFEKGKRYRYVDDFERHLPLVDMVSKKKIDMIAPQHGA.......................................... 223
17 -25.000TM0755 TM0755 282625 PDB-2004-09-21  ali follow..  16  6....................TERIFDDPEIYVLRIDDYNAYLVKLNGANVLIDGWKGNYAKEFIDALSKI-VDPKEITHIIVNHTEPDHSGSLPATLKTIDVEIIASNFGKRLLEG-------------FYGIKDVTVVKDGEEREIGGKKFKFVMTP-HWPDTMVTYLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYLEGAEKLSSLKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMK 272
18 -20.100PU1679B YP_753611.1 381520 Purified-2007-11-06  ali follow..  16  25.......................................SALVEVDERKILFDTG---SSDALFKNAENLGVKLEEVEALVISHGHFDHTSAVIPFLQRFGKKLYLHPGEPEDLVKNGAEIIFIDSFSEIMPLLEDRLLDDMALLVDHPEGLIIISGCAHS-GMINTIEYIREKTGRSKIAFIGGTHLIT----------ASEDRLAQTIAVLKMMDIEKIAVGH............................................ 247
19 -19.800MA2439A NP_057291.1 399960 Purified-2009-03-27  ali follow..  13  13............................LIRPLGAGQ-SCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSGRTFMTHADYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHA-GHVLGAAMFMIEIAGV----KLLYTGDFSRQEDRHLMAAEIPNIKPDIL------------IIESTYGTHIHEKREEREARFCN--TVHDIVNRGGRGLIPVFALGRAQE. 248
20 -19.500GD14186A YP_001299287.1 388212 Crystal|NMR-2008-04-09  ali follow..  11  1.......................MEIKGKVHYVGVNDYNSYLI-DDEMVALVDTVDVCYFEVYLKKIRSI-IGDKPINYLIINHMEPDHSGSISLIKQYYNIVIVGNKKTFEMIEG-------------YGVGGERYVVGEGDFLALGHHRLRFSLIP-HWPETMVTFDETEGILFSGDAVVDTNINTDIYWNEMVRYYSNIVGKYQKALQKLQNLKITTVCSTHGPVWTEEIPRVVRIYDRLSRYEA-MYGNTEEVAEAIAEELSKQ. 273
21 -19.200TM0663 TM0663 282535 Purified-2004-02-02  ali follow..  13  3.......................IEIFDGHRNIGGNKIR--VVDSENDGFLLDFGLNPRTGKILHDLLKLKMVPRNHAFLFLSHAHADHTGMVGLIDE--KIPLLMTGETFAVMRNSKNAEKLTRRVSFPKNIEFNDDLTVVDVNSLWKNELFVEPVYHSVIGAAGLAARVDD----LWLAYTGDFRTGPETAEEERYWLDTLGETSRFFENLKDKRPLVLIEENIENTEKDVFENAMRVFRGTKNLILVDFPIRHLERLFTFLKVCME 326
22 -18.500PU1679C NP_247422.1 381581 Purified-2007-10-25  ali follow..  11  21.......................................SALIEINNKRILFDAGQNS---ITLRENLRLFNEKEGFDYIVLSHGHYDHCDGLKYVIENDLGKVIAHKAGNRYIGIDEEIKEYLLKKADLEIIEEPYKIDKD-IIVSGYVPGILITGCSHS-GIINVVEYGKKLSEIKGVL------------GGFHLVGVSDNYLNRIVDYFKSQDFWI-MPMH............................................ 229
23 -18.200TT10477A YP_012016.1 404703 Selected-2009-08-14  ali follow..  12  131............................ALHPENPGGFSCLILDGTKHKYLLDTGWSYDW--MEKSFKREGIDAREIEALFISHEHWDHFWGLPVMKYDNRIPLYVHDEGLQYIKDSGYKGTPVIQKEPMRQIIPGMAVLKFDVFNVKDKGLVLISGCCHQ-GILQMADFAYTDLKYDNDRFYGIYG-----GLHISPFEDWDPKYDDLVISLAKWNFERIGCNH............................................ 345
24 -17.200GS13936A YP_001303382.1 384870 Purified-2008-06-17  ali follow..  14  48............................QIHLIYTGVSESMFLIFPDGTMLLDCGDHNAGEWISRYVRRVNPQKDYVDYMMLTHYHSDHGGNNKFYARKSGFSQAAEYLTFGKAFDRCWPDYNDPLPLTQEAADA-FCLGETNQIAMKGFSVRNICANGRIADKEG---SENGMSLGMIFTYGDFKFYTAGDFSDGWELPNGKRFEIEDAIADVVEPVSVAKINHHGHKSMTDKAALRPRVVVNNVWDQLHTLPSVMERFYNRN..... 355
25 -15.300TM1162 TM1162 283028 Crystal|NMR-2002-09-14  ali follow..  16  3................................VTFLGHAVVLIEGKKN-IIIDPFISGNPVCPVKL------GLPKIDYILVTHGHGDHLGDAVEIAKKNDATVISNYEICHYLGKGGSYLFDFGRVKMTPAVHGSGILDGDSMIYGGNPSGFLITIEGKK------IYHAGDTGLTREMELLAEENVDVAFLPIGGNFVMDVEDAVRAAVMI---KPKKVVPMH............................................ 190
26 -15.000GS13918A NP_809107.1 384839 Selected-2007-09-11  ali follow..  11  112..............DRVMDGIENSKVENGTAEIWLLYNMGYIVKTPSGCFAIDISHRWAKELA-----------PYIDFLCVTHKHSDHYNDLIQAMFDLDKPVLSNY---------------------LKDTTYPYTAKGDKDYEIGKFKIRTCITDHNNSGLTIFQIDCGDDTGNFVFMHVGDSNAPHVNVLIPRYAPNALTENNILGTGAGQVQPDYVLLSH............................................ 304
27 -14.800SP13918A ZP_03458960.1 407444 Purified-2010-09-29  ali follow..  14  112..............ERVLDGVKSSTVENGTAQIWLLYNMGYIIKTPSGCFGIDISHRWAEEFA-----------PYLDFLCVTHKHSDHY-------------------SNNLIQAMYDLDKPVLSNYLQPVASYPFYSKKSEEYTIGNFKIRTCIT-NHNEASLKNFVTVFYIDCGLTLIHTGDSNFKPVQYADITDANDVNHHVDIIGTGTGQVTPDYVLLSH............................................ 311
28 -13.700GS0207A YP_001302908.1 384386 PDB-2009-11-06  ali follow..  16  38................................ITFIKHGSLMLTYDNHSIQVDPVSEYADYT----------TFPKADIILITHEHGDHLDKAIQAVEKSDTEIIANENSQKKLGKGK------------------VLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTF-------------DGLRVYIAGDTEDIPEMKDLKDIDIAFLPVNQPYTMTVSQAAKAARMFSPKIL-HYGDTKIGELKDALKDSGIDVR 236
29 -10.200TM0207 TM0207 282087 PDB-2004-03-11  ali follow..  12  3................................ITWFGHACFALEMEGKTIVTDP-------------ESVGYPIPNVTVVTESHQHFDHNA------------HHLVKGNFRVIDRPGAYTVNGVKIKGVETFH-----DPSHGRERGKNIVFVFEGEGHL-GDLGHVLTPAQVEEIGEI-----------DVLLVPVGGTYTIGPKEAKEVADLLNAKVIIPMH............................................ 161
30 -9.560MA8968B NP_945341.2 400228 Cloned-2009-02-26  ali follow..  14  126............................RVTWLGH---ATVMVEMDELIFLTDPIFSSRASPSQKRFRRSPCTISEIDAVLISHNHYDHLNSVIALNERFGLRWFVPLGLLDWMQKCG--------------CENVIELDWWEENCVGHDKVTFVFTPSHWCKSWSVLGPWNRFFFAGDTGYCPAFEEIGKRFGPFDLAAIPIGAYEEAVRIHTDVQTKKSMAIHWGTFALANEHYLEPPVKLNEALERYGLNAEDFFVLKHGES.... 383
31 -9.550MA8968A NP_848843.1 400511 Cloned-2009-02-26  ali follow..  16  126............................RVTWLGH---ATLMVEMDELIFLTDPMFSSRASPSQKRFRRPPCTISEIDAVLISHNHYDHLGSVLALNERFGLRWFVPLGLLDWMQKCG--------------CENVIELDWWEENCVGHDKVTFVFTPSHWCKSWSVLGPWSRFFFAGDTGYCPAFEEIGKRFGPFDLAAIPIGAYEDAVRIHIDLQTKRSVAIHWGTFALANEHYLEPPVKLNEALERYGLSCEDFFILKHGES.... 383

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.