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Query: 2yz3_A mol:protein length:266 Metallo-beta-lactamase, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFKLLSKLLVYLTASIMAIASPLAFSVDSSGEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRSVVELast
1 -101.0002yz3_A mol:protein length:266 Metallo-beta-lactamase  ali model  100  1MFKLLSKLLVYLTASIMAIASPLAFSVDSSGEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRSVVE 266
2 -100.0004uwo_B mol:protein length:266 METALLO-BETA-LACTAMASE VIM-26  ali model follow..  90  1MLKVISSLLVYMTASVMAVASPLAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEAEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVLELSSTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVKAHKNRSVAE 266
3 -97.0005a87_A mol:protein length:248 METALLO-BETA-LACTAMASE VIM-5  ali model follow..  91  1..................GPSPLAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRKAGVATYASPSTRRLAEAEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVLALSRTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVTAHKNRSVAE 248
4 -97.0002y87_A mol:protein length:265 METALLO-B-LACTAMASE  ali model follow..  73  1.MFQIRSFLVGISAFVMAVLGSAAYSAQPGGEYPTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKALSSSGDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHGLPGGLELLQHTTNVVKTHKVRPVAE 265
5 -89.9003rkk_A mol:protein length:237 Beta-lactamase NDM-1  ali model follow..  35  1............................SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 237
6 -89.8004exs_B mol:protein length:272 Beta-lactamase NDM-1  ali model follow..  32  6IMHPVAKLSTALAAALMLSGCMPGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRL..... 271
7 -89.2005a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1  ali model follow..  34  1......................MGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRLE.... 245
8 -89.1004gyq_A mol:protein length:243 Beta-lactamase NDM-1  ali model follow..  34  1......................SNAIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGAADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 243
9 -89.1004rl2_A mol:protein length:246 Beta-lactamase NDM-1  ali model follow..  34  1...................GSHMGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 246
10 -88.3004tyf_A mol:protein length:231 NDM-4  ali model follow..  36  3....................................GDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 231
11 -88.3003spu_A mol:protein length:265 Beta-lactamase NDM-1  ali model follow..  33  1.....................MPGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRKLVPR. 249
12 -87.7002uyx_A mol:protein length:228 BETA-LACTAMASE II  ali model follow..  36  1...........................ASQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHASRIGGIKTLKERGIKAHSTALTAELAKKNG----YEEPLGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK......... 228
13 -87.3002nze_A mol:protein length:222 Beta-lactamase II  ali model follow..  36  1.................................KTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTAELAKKNG----YEEPLGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK......... 222
14 -86.8003fcz_A mol:protein length:222 Beta-lactamase 2  ali model follow..  36  1.................................KTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSSGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDAIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNG----YEEPLGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVSKRYRNINAVVPSHGEVGDKGLLLHTLDLLK......... 222
15 -86.3001m2x_A mol:protein length:223 class B carbapenemase BlaB-1  ali model follow..  26  1..........................................DVKIEKLKDNLYVYTTYNTFNGTKYAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKEN----KPRAQYTFDNNKSFKVGKFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLINEYQQKQKA. 221
16 -85.8003l6n_A mol:protein length:219 metallo-beta-lactamase  ali model follow..  27  1......................................QVKDFVIEPPIKNNLHIYKTFGVFGGKEYSANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGKAT----STEIIKTGKPYRIGGFVVDFLGEGHTADNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIPGHDEWKGGGHVEHTLELLNK........ 218
17 -85.4001a7t_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  29  1.................................AQKSVKISDDISITQLSDKVYTYVSLAEIEGGMVPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKG----LPVPEHGFTDSLTVSLDGLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGNYGGTELIEHTKQIVNQYIESTSK. 231
18 -85.3001znb_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  29  1.................................AQKSVKISDDISITQLSDKVYTYVSLAEIEGGMVPSNGMIVINNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKG----LPVPEHGFTDSLTVSLDGLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGDYGGTELIEHTKQIVNQYIESTSK. 231
19 -81.1004wd6_A mol:protein length:233 Metallo-beta-lactamase  ali model follow..  32  1.....................................NDEVPELRIEKVKENIFLHTSYSRVNGFGVSSNGLVVIDKGNAFIVDTPWSDRDTETLVHWIRK-NGYELLGSVSTHWHEDRTAGIKWLNDQSISTYATTSTNHLLKENKKE-----PAKYTLKGNESTLVDIEVFYPGGGHTIDNVVVWLPKSKILFGGCFVRSLDSEGLGYTGEAHIDQWSRSAQNALSRYSEAQIVIPGHGKIGDIALLKHTKSLAETASNKSIQ. 225
20 -79.8002ynt_B mol:protein length:233 GIM-1 PROTEIN  ali model follow..  33  1.....................................SQGHKPLEVIKIEDGVYLHTSFKNIEGGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATD-RGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFK-----DDEFTLGNIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEALGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNKLMQ. 225
21 -79.8001x8h_A mol:protein length:228 Beta-lactamase  ali model follow..  26  1.........................................AGMSLTQVSGPVYVVE-----DNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWAELPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCILKEK----LGNLSFADVKAYPQTLERLKAMKLPIKTVIGGHDSPHGPELIDHYEALIKAAPQSS... 228
22 -79.5004ubq_A mol:protein length:229 Beta-lactamase  ali model follow..  29  1....................................AGARLPDLKIEKLEEGVYVHTSFEEVNGWGVSKHGLVVLVNTDAYLIDTPFTATDTEKLVNWFVE-RGYKIKGTISSHFHSDSTGGIEWLNSQSIPTYASELTNELLKKDGKVQAKNSFS-----GVSYWLVKIEVFYPGPGHTQDNVVVWLPEKKILFGGCFVKPDG---LGNLGDANLEAWPKSAKILMSKYVKAKLVVSSHSEIGDASLLKRTWEQAVKGLNESKK. 223
23 -78.9005acp_A mol:protein length:250 GIM-1 PROTEIN  ali model follow..  33  1....MKNVLVFLILLVALPALA----------------QGHKPLEVIKIEDGVYLHTSFKNIEGYGVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATD-RGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFK-----DDEFTLGNIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEREGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNKLMQ. 242
24 -78.9004f6h_A mol:protein length:236 Beta-lactamase  ali model follow..  31  1.....................................AESLPDLKIEKLDEGVYVHTSFEEVNGWGVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVE-RGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFS-----GVNYWLVKIEVFYPGPGHTPDNVVVWLPERKILFGGGFIKPYG---LGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKK. 222
25 -77.0003q6v_A mol:protein length:233 Beta-lactamase  ali model follow..  22  2.......................................SEKNLTLTHFKGPLYIVE-----DKEYVQENSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGSLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHTKDGIFVYFPAERVLYGNCILKEN----LGNMSFANRTEYPKTLEKLKGLIEKVDSIIAGHDTPHDVGLIDHYLTLLEKAPK..... 233
26 -75.1004bp0_A mol:protein length:250 METALLO-B-LACTAMASE  ali model follow..  27  2...............................PKSSDHVDLPYNLTATKIDSDVFVVT-----DRDFYSSNVLVAKMLDGVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRIKANVFDLKQGKVFSFSNVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKE---LGYLGDANVKAWPDSARRLKKF--DAKIVIPGHGEWGGPEMVNKTIKVAEKAVGEMR.. 249
27 -35.9002zwr_A mol:protein length:207 Metallo-beta-lactamase superfamily protein  ali model follow..  22  11..................................................................LQENAYLVETGEGPVLIDPGDE---PEKLLALFQTT-GLIPLAILLTHAHFDHVGAVAPLVEADLPVYLHPLDLPLYEGADLAPKPPLPVRPLEEGMRL---GFQVLHL-PGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYD-LPGADPKALFASLKRLLSL-PPETRVHPGHGPGTTLGLEARTNPFLTGLEWEA... 207
28 -35.7003lvz_A mol:protein length:294 Blr6230 protein  ali model follow..  13  1MRR------LTAALCALTLLSTGAQAQTIKDFLAVAMKKWTAPFEPFQLIDNIYY---------GTDGIAVYVIKTSQGLILMDTAM-PQSTGMIKDNIAKL--ADIKLILNTHAHLDHTGGFAEIKKEGAQLVAGERDKPLLEGGDLAFPAVKVDRAVKEGDRVTLGDTTLAHATPGHSPGCTSWEMTVKDVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAM--KIDVLLGPHPEVYGVTYATSLSEDFDKQLAKQTAA 290
29 -35.6001sml_A mol:protein length:269 PROTEIN (PENICILLINASE)  ali model follow..  15  18........................................LQPMAPLQIADHTWQ---------GTEDLTALLVQTPDGAVLLDGGM-PQMASHLLDNMKAR--RDLRLILLSHAHADHAGPVAELKRRGAKVAANAESAVLLARGGSDYPPANADRIVMDGEVITVGGIVFAHFMAGHTPGSTAWTWTDTRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRAL--PCDVLLTPHPGASNWDYAAGARAGAKALTCKAYAD 251
30 -35.1002p97_A mol:protein length:201 Hypothetical protein  ali model follow..  13  6................................................HRPDLYSWSTFNPARN--IDFNGFAWIRPEGNILIDPVALSNHDWKHLESLGG-----VVWIVLTN--SDHVRSAKEIADQYTKIAGPVAEKENFPIY--------CDRWLSDGDELVPGLKVMELQG-SKTPGELALLLEE-TTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLLEKVEAVLVGDGWSVFRDGRDRLKELVATLA...... 201
31 -34.9004p62_A mol:protein length:295 Metallo-beta-lactamase AIM-1  ali model follow..  13  1MKRRF---TLLGSVVALALSSTALASDAPASRGCADDAGWNDPAMPQKVYGNTWYV--------GTCGISALLVTSDAGHILVDAAT-PQAGPQILANIRALRPEDVRAIVLSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGAEPVAPVANIVTLADDGVVSVGPLALAVASPGHTPGGTSWTWRDCRQMVYADSLTAISDDVYRYSDDGYLAAFRNTLARVAAL--DCDILVTPHPSASGRRYAQGARQRLEKRLAEEAA. 294
32 -34.7004awy_B mol:protein length:303 METALLO-BETA-LACTAMASE AIM-1  ali model follow..  13  1...MKRRFTLLGSVVALALSSTALASDAPASRGCADDAGWNDPAMPLKVYGNTWYV--------GTCGISALLVTSDAGHILVDAAT-PQAGPQILANIRALRPEDVRAIVFSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGAEPVAPVANIVTLADDGVVSVGPLALAVASPGHTPGGTSWTWRDCRQMVYADSLTAISDDVFRYSDDGYLAAFRNTLARVAAL--DCDILVTPHPSASGRRYAQGARQRLEKRLAEEAAT 295
33 -34.1002q0j_A mol:protein length:321 Quinolone signal response protein  ali model follow..  18  5............................................SSGLVPRGSHMQLDDDLCLLGDVQVPVFLLRGEASWALVEGGIS-RDAELVWADLCRADPSQVHYWLITHKHYDHCGLLPYLCPRNVQVLASERTCQAWKSESA-AWDALPVRAVADGEWLELGPRHRLQVAHGHSDDHVVFYDVRRRRLFCGDALFDEAEGVWRPLVFDDMEAYLESLERLQRL-PTLLQLIPGHGGLLRGRLAADGAESAYTECLRLCRR 261
34 -33.9002zo4_A mol:protein length:317 Metallo-beta-lactamase family protein  ali model follow..  18  1.............................................MKALLPGLYLLPVPIPYPLKTV--NLYLLQGAGEVALVDTALGTRAARGALELHLAELGQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWLRDGEALEVAGKRLVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAENPLKDFLRSLDRLADL--GARVAYAGHFGP--EELKAHHQARLEALLALLDGP 265
35 -32.7001jt1_A mol:protein length:263 FEZ-1, class B3 metallo-beta-lactamase  ali model follow..  11  5........................................PNPFPPFRIAGNLYY---------GTDDLASYLIVTPRGNILINSDLE-ANVPMIKASIKKL--SDTKILLISHAHFDHAAGSELIKQQKAKYMVMDEDVSVILSGGKSDTQSTVDKVLHDGERVELGGTVLAHLTPGHTRGCTTWTMKLKDAVIIGSIGVNPGYKLVDNITPKIAEDYKHSIKVLESM--RCDIFLGSHAGMFD..................... 220
36 -32.6003vpe_A mol:protein length:262 Metallo-beta-lactamase  ali model follow..  14  6........................................SSPQQPFTIYGNTHY---------GTGGISAVLLSSPQGHILVDGT-TEKGAQVVAANIRAM--SDVKYILSTHSHEDHAGGISAMQKLGATVLAGAANVDTLRTGVSPFPGSAKVRAVADGELVKLGPLAVAHATPGHTEGGITWTWQSCEVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKL--SCDIAIAAHPEVND..................... 220
37 -31.9005iqk_A mol:protein length:271 beta-lactamase Rm3  ali model follow..  15  11........................................NADQAPFRLFGNTYY---------GMKGLSSVLVTSPQGHVLIDGGL-PESAPKIIANIGAL--EDVKLILNSHGHIDHAGGLAELQRRNALVAASPSAALDLASGEVKYPPVKDMRLARDGGQFNVGPVYLAHATPGHTPGGLSWTWQSCDGPRCLNMVYADSINAVSRPGPNALADLRHSFETLEKL--PCDVLISAHPEASQRAYVAAARTLLDSRLDQEKQQ 271
38 -31.9003adr_A mol:protein length:261 Putative uncharacterized protein ST1585  ali model follow..  11  20....................................................................ATVYVMCGEKLTVMIDAGVSNSIADFSFLD-------KLDYIVLTHLHIDHIGLLPELLQVKAKVLVKSGFKKYLTSEDGLKKLNESAEEVEGNEEFDLGGYRMLIYTPGHARHHMSVLV--DDFLFTGDSAGAYFNGVVIPTTVIDYKMYMESLKRQIELKPK--VVGFAHGGLVSPKIMEEHLKQMLSKEEIQIN. 232
39 -31.7005aeb_A mol:protein length:272 LRA-12  ali model follow..  10  2........................MASQKVKEPTVSNADWSKPYRPFRIAGNLYY---------GTYDLACYLITTKQGNIIVNTGLA-ASALQIKNNIKAL--TDTKILLTTQAHYDHLGAMAEIKKIGAKLMADEGDATVMADHGSMFEPIIADRLLHDKDTIQLGDTKLMLHHPGHTKGSCSFLFDTKDILIANMPIVIEKKFSEVSSYPGIAKDYAYTLQAMKNL--SFDIWVASHASQFS..................... 232
40 -31.0001ztc_A mol:protein length:221 hypothetical protein TM0894  ali model follow..  14  29....................................................................STVVYLEHKDRRIIIDPGNLSS-MDELEEKFSELGISPITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKPWHAREHLSFLLDTENVLITGDITPNRLS-----YYDIIKGYGSVQVKNFLDRVGRIDLLVFPHDAP....................... 208
41 -29.5004ad9_A mol:protein length:289 BETA-LACTAMASE-LIKE PROTEIN 2  ali model follow..  17  8............................................RVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPE-SCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVL-PGHTDDHMALLLEEENAIFSGDCILGEGTTVF-----EDLYDYMNSLKELLKI--KADIIYPGHGPV-----IHNAEAKIQQYISHRNIR 221
42 -28.6004v0h_A mol:protein length:266 METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROT  ali model follow..  22  68....................................................................AEAALEEAARGPILVDTGGPWAR-EALLGALAGQGVAPVTLVVGTHGHSDHIGNLGLFP--GAALLVSHDFCLPGGRYLPHGLGEGQPLRLGPGLEV--------WATPGHGGQRDVSVVVAGTVVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVV---ADVVVPGHGPP....................... 234
43 -27.5002xf4_A mol:protein length:210 HYDROXYACYLGLUTATHIONE HYDROLASE  ali model follow..  18  11..................................................................FSQNCSLIEQTRLAALVDPGGD---AEKIKQEVDAS-GVTLMQILLTHGHLDHVGAASELAQHGVPVIGPEKEDEFWLQG-DECQPLTPDRWLNDGDRVSVGNVTLVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSD-FPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQD........ 210
44 -27.3005i0p_A mol:protein length:366 Beta-lactamase domain protein  ali model follow..  18  1......................MAMNALEHQLDYPFADTLPAAGDTFEVAPGVRWLRMPLPFSLDHI--NLWLLRDQAGWTIVDCGISSEAIRTHWEQIRHLDGLPVLRVLVTHCHPDHFGLANWLCEGNVRLWMTLGEYMFGCLMAAGNGSNAGGAALREGDAVKIGARTWVVTGYGHSPEHCALHSEADGVLISGDMVLPRISTNVSVFDLEPLALYLESLGRYETM-APDTLVLPSHGKP--AQLRAHHDARLEEVRVACAEK 303
45 -26.5002r2d_A mol:protein length:276 Zn-dependent hydrolases  ali model follow..  16  41..................................................................IPVSAYLIQCTDATVLYDTGCHPESECNLPERLRQLGLSPISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEERERELAPGVNLLNFGTGHASGMLGLAVRLEKFLLVSDACYNYGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLVLFGHDREQFASLIKSTDGFYE......... 276
46 -26.4001xm8_A mol:protein length:254 glyoxalase II  ali model follow..  16  9..................................................................LKDNYAYILDTGTVGVVDPS----EAEPIIDSLKRS-GRNLTYILNTHHHYDHTGGNLELKDRGAKVIGSAMDKDRIPG---------IDMALKDGDKWMFAGHEVHVMDPGHTKGHISLYFPGSRAIFTGDTMFSLS---CGKLFEGTPKQMLASLQKITSL-PDDTSIYCGHSNSKFALSLEPNNEVLQSYAAHVAE. 198
47 -25.9001qh3_A mol:protein length:260 PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE)  ali model follow..  17  9..................................................................LTDNYMYLVIDDEAAIVDPV----QPQKVVDAARKH-GVKLTTVLTTHHHWDHAGGNEKLVKLGLKVY------------GGDDRIGALTHKITHLSTLQVGSLNVKCLAPCHTSGHICYFVSEPPAVFTGDTLFVAG---CGKFYEGTADEMCKALLEVLGRLPPDTRVYCGH---------EYTINNLKFARH..... 185
48 -24.9002p18_A mol:protein length:311 Glyoxalase II  ali model follow..  17  31..................................................................LKDNFSYLITTHTLAAVDVNADYKPILTYIEE-NADVTYTFSTILSTHKHWDHSGGNAKLKAE-----AMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDPCHTRGHVLYKVQHPQALFTGDTMFIAG---IGAFFEGDEKDMCRAMEKVYHIHDKVTFIFPGH---------EYTSGFMTFSEK..... 232
49 -24.4003dha_A mol:protein length:254 N-Acyl Homoserine Lactone Hydrolase  ali model follow..  14  37..................................................................LPVWCYLLETEEGPILVDTGMPESAVNNIVNILKRVGYEPLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIETEQVLLTIDASYKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKIIFFGH-DIEQEKSCRVFPEYI.......... 254
50 -24.3002br6_A mol:protein length:252 AIIA-LIKE PROTEIN  ali model follow..  14  35..................................................................LPVWCYLLETEEGPILVDTGMPESAVNNIVNILKRVGYEPLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIKTEQVLLTIDASYKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKIIFFGH-DIEQEKSCRVFPEYI.......... 252
51 -23.9003aj3_A mol:protein length:274 4-pyridoxolactonase  ali model follow..  15  2.........................................SDTKVYLLDGGSLVFWNRGPGGEVRFPVYSILIEHAEGRFLIDTGYDYEKHQTIPGALGLLGLEPIDVVVNSHFHFDHCGGNKYFPHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEDGDVDLARGVKLIST-PGHSIGHYSLLVEFPRILFTIDAAYTQKSLETLCQAHIDPVAGVNSMRKVKKLAEDHGALMYSHDMDNFKTYRTGTQFY........... 267
52 -23.4004chl_A mol:protein length:238 PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL  ali model follow..  19  28...........................................................................ESREAVLIDP----ETAPRDAQLIKE-LGLRLLYAVNTHCHADHITGSGLLRSL----------LPGCQSVISRLSGAQADLHIEDGDSIRFGRFALTRASPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTL-PGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEE 205
53 -22.2004fek_A mol:protein length:262 Putative diflavin flavoprotein A 5  ali model follow..  13  2....................................SDSKPRDVQVLPIATNTK-VLRARSWSERGTTSNSYVIEG-DKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELQITFVCSLPAAGDLRAAFPDDNLNI--LPMRGKETLDLGKLKFLPIPSPRWPAGLCTYDVQTQILYTDKIF--GAHICGDDVFDDNWESFEAALEKISDL--QVRLYAVGHGPLVRTSLIALTQAYADWSKAQKLE. 256
54 -21.3004le6_A mol:protein length:324 Organophosphorus hydrolase  ali model follow..  17  3.LFSLSTALSSAMIALVSLPLQAAAPAQQKTQVPGYYRMALGDFEVTALYDGLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQPTLGVVQTNLKASGYQPVDTVLLTHLHPDHACGLEFWLDEATMAKAPEGMQGMFKMAQQAVAPYAKMKPYKTEGELLPGVSLVASPG--HTPGHTSYLFKSQSLLVWGDILLQFAKPEVVFEFDVDSDQARQSRQRILAEAATDKLWVPGLGHV....................... 303
55 -21.3002gcu_A mol:protein length:245 Putative hydroxyacylglutathione hydrolase 3  ali model follow..  16  26...........................................................................PDKPALLIDP----KTVDRDLKLIDE-LGLKLIYAMNTHVHADHVTGTGLLKTK----------LPGVKSVISKASGSKADLFLEPGDKVSIGDIYLVRATPGHTAGCVTYVTPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTL-PKDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKDKET 209
56 -21.2004o98_A mol:protein length:337 organophosphorus hydrolase  ali model follow..  17  1MRLSLSTALSSAMIALVSLPLQAAAPAQQKTQVPGYYRMALGDFEVTALYDGLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQPTLGVVQTNLKASGYQPVDTVLLTHLHPDHACGLEFWLDEATMAKAPEGMQGMFKMARQAVAPYAKMKPYKTEGELLPGVSLVASSG--HTPGHTSYLFKSQSLLVWGDILIQFAKPEVVWEFDVDSDQARQSRQRILAEAATDKLWVPGLGHV....................... 303
57 -21.2004ysb_A mol:protein length:233 Metallo-beta-lactamase family protein  ali model follow..  17  22...........................................................................ATRQAVLIDP----EQVDRDLQMVAE-LDLTLTHVFDTHVHADHITASGALRERQATVVGSVNGASCA------------NVQVRHGDEVRVGQLVFQVL-PGHTDDSISYLLGDR--VFTGDALLVRGNGRTDFQNGNASQLYDSLTRVLFTL-PDETLVYPGHDYKGTVTSIAEEKRHNPRVAGKSREE 197
58 -20.7003esh_A mol:protein length:280 Protein similar to metal-dependent hydrolase  ali model follow..  12  4.........................................GDISIHYLNGGNTKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGEESHIIADLANYTPKDIDYVLMTHMHFDHAAGLTVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVPGIKMQHSG-GHSFGHTIITIESDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKIPYFIQQQYWFLFYHDENYFAVKYSDDGENIDAY....... 270
59 -20.5004zo2_A mol:protein length:294 Acylhomoserine lactonase  ali model follow..  18  1..............................DDLSGFKKIKLGELELFILTDGYILKDNFRADHYIDMAINILLVKTKEKLILMDTGMGIERTGFLLKSLQKAGFSAITDIFLSHAHPDHIGGV-FISKIEHDFWINASIKDFNNSALKAHPERLNQIIPALQNILK-PKLKFYDLNPGHTPGLTVTTISSEKLMYVADLIHSDPHPDWGFSGDTDLDIATASRKKFLKQLADTKARAPGLGFT....................... 278
60 -20.5004xuk_A mol:protein length:291 Putative hydrolase  ali model follow..  17  1..............................KQVAGYYQYQAGDVQITALLDGILKKYYADQEKGVQTSINAFLVNIGKSLILIDSGAASSHLGSVLSNLKASGYQPVDTILLTHLHPDHVCGISYVSNDEASFWLDPKQAAKLPKEKQANYLGTVEKIYQAKQRFKTYKLGDDIQGAGHTPGHFSYELKTESIVFIGDIVHQFDRPETAIEYDIDPKKAVETRLKQFANFAKNGQTIPGIGHTYSAD................... 278
61 -20.0001p9e_A mol:protein length:331 Methyl Parathion Hydrolase  ali model follow..  19  19.......AATAAVAPLTLVSTAHAAAPQVRTSAPGYYRMLLGDFEITALSDGTVALAKSFQKAPLETSVTGYLVNTGSKLVLVDTGAAGPTLGRLAANLKAAGYQPVDEIYITHMHPDHVGGLLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMAVKAGKFKPFSGNHGHTPGHTTYVVESQKLALLGDLILQFDDPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIPGIGHI....................... 311
62 -19.3002ohh_A mol:protein length:404 Type A flavoprotein fprA  ali model follow..  13  2..........................................KAAAKRISDGVY-LRNYHGYTLQGTTYNAYLVCGDEGVALIDNGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRREAPIYCTEVAVKGLLKHYPSLREAEF-MTVKTGDVLDLGGKTLTFLET-HWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILLKKFDEVKELLERIQMIAPSHGQI....................... 236
63 -19.1004d02_A mol:protein length:479 ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDO  ali model follow..  14  3..............................................IVVKNNIHDFHGTEYKTLRGSSYNSYLIRE-EKNVLIDT-VDHKFSREFVQNLRNEIDADIDYIVINHAEEDHAGALTELMAQDTPIYCTANAIDSINGPEWNF------NVVKTGDTLDIGNLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDR 249
64 -18.9002q9u_A mol:protein length:414 A-type flavoprotein  ali model follow..  13  8...........................................VQDQEMIPGVYIFHGYHTDEGSSY--NSYFIDD-ECPTVIDS-VKYPFAEEWLSRIAACCPDKIKYVVMNHAEGDHASSLKDHYHKNATFVCTKKCQEHLKILYGMEKATW--LIVDDKYTLKIGKRTLKFIPV-HWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVRKALEVASTV--EIKYILSAHGVSWRGDAMGLAIAEYDRWSKGQHCQ 256
65 -18.6001ycf_A mol:protein length:398 Nitric oxide reductase  ali model follow..  16  2............................................QPVAITDGIYYFHGPAFSTHRGTTYNAYLIVD-DKTALVDT-VYEPFKEELIAKLKQIKDVKLDYLVVNHTESDHAGAFPAIMELDAHVLCTQRAFDSLKAHYSHIDFNY--TIVKTGTSVSLGKRSLTFIEA-HWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAK 253
66 -18.3001e5d_A mol:protein length:402 RUBREDOXIN:OXYGEN OXIDOREDUCTASE  ali model follow..  18  1...........................................MQATKIIDGFH-LVGAIDWNSRDFHGNAYLVED-EKTTLFDT-VKAEYKGELLCGIASVIDKKIDYLVIQHLELDHAGALPALIEAPEKIFTSSLGQKAMESHFHYKDWPV--QVVKHGETLSLGKRTVTFYET-HWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLLKAIETLVGAGVAPEFICPDHGVI....................... 229
67 -17.7002qed_A mol:protein length:258 Hydroxyacylglutathione hydrolase  ali model follow..  15  16..................................................................FQDNYIWVLTNDECVIVDPG----EAAPVLKAIAEH-KWMPEAIFLT----DHVGGVKELLQHQMTVYGPAETQ-----------DKGATHLVGDGDTIRVLGEKFTLFAPGHTLGHVCYFSRP--YLFCGDTLFSGG---CGRLFEGTPSQMYQSLMKINSL-PDDTLICCAHANIKFALSILPHDSFINEYYRKVKE. 197
68 -17.4003tp9_A mol:protein length:474 BETA-LACTAMASE and RHODANESE DOMAIN PROTEIN  ali model follow..  18  15....................................................................AHASYLVGCQEACVID----PARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRGAAICVSDEGPP---EWKSEYVKAYPHRLLKDGDELHFGNVRIVVM-PGHTPEHVSYLLYDGKALFSGDFVFVGRVAGESGSSEALARQMFRSLRKFEAL-PDHVQVLPAHGA........................ 201
69 -17.2003r2u_A mol:protein length:466 Metallo-beta-lactamase family protein  ali model follow..  18  30....................................................................SQASYLIGCQKAMIID----PIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKNANIYVSGESDDTLGYKNMPNHTH----FVQHNDDIYVGNIKLKVL-PGHTPESISFLLTDEGGLFSGDFIFVGKAVKVEGSSEIGAKQMFKSIESIKDL-PDYIQIWPGHGA........................ 215
70 -17.0001vme_A mol:protein length:410 Flavoprotein  ali model follow..  14  12...........................................TERIFDDPEIY-VLRIDDDRIRYFEANAYLVKLNGANVLIDG-WKGNYAKEFIDALSKIVDKEITHIIVNHTEPDHSGSLPATLKTDVEIIASNFGKRLLEGFYGIKDVT----VVKDGEEREIGGKKFKFVMT-HWPDTMVTYL--DGILFSCDVGGGYLLPEILDDSNESVVE-LEGAEKLSSL--KIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKG 260
71 -15.4003kl7_A mol:protein length:235 Putative metal-dependent hydrolase  ali model follow..  3........................................SDKIENLYFQGDSFKTKSGKELTITFIKHGSLMLTYDNHSIQVDPVSEYADYTTF---------PKADIILITHEHGDHLDAIQAVEKSDTEIIANENSQKKLGKGK---------VLKNGDTDTSISYMKIEAVPAYNTTPGYILTFDGLRVYIAGDTEDIPEMKDLKDIDIAFLMTVSQAAKAARMFSP--KILYPYHYGDTKIGELKDALK............ 217
72 -15.1003g1p_A mol:protein length:258 Protein phnP  ali model follow..  11  41......................................................................SGVVKFNDAITLIDAGLHDLADRWSPGSFQQ--------FLLTHYHMDHVQGLFPLRGDPIPVYGPPDEQGCDDL--KHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETA----HSRVAWLSDTAGLPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVQVIRSPRVILTHISHQF... 227
73 -15.0004nur_A mol:protein length:633 PSdsA  ali model follow..  17  89.............................................LFEVTDGIYQVRNYD-------LSNMTIVEGKDGITIFDPLISQETAKAALDLYYKHRPKPVVAVIYTHSHVDHYGGVADVKAGKVKIYAPLGFLEHAVAEGTVTLIPPTDIIKETGETHVIDGLTYEFAPGSEAPAEMLYYIKEKKALNAAEDSTHTNTYSLRGAKIRDPLAWSKYLNEALKLWGDDVQVMPVWGNKEVREQLSLQRDMYRYINDET... 354
74 -14.8002cfu_A mol:protein length:658 SDSA1  ali model follow..  15  107.............................................LFEVAEGIYQVRGFD-------LANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGRPIRTVIYSHAHADHFGGVQQVASGAVQIIAPAGFMEAAIKEGPLSLLAPTRLIEGEGEDLVLDGVPFTFTPGTESPAEMNIWLPRQKALLMAENVVGTNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMPRWGNAEIVEVLEKQRDLYGYLHDQT... 372
75 -14.7004pdx_A mol:protein length:640 Putative alkyl/aryl-sulfatase YjcS  ali model follow..  15  89.............................................LFKVTDKMYQVRGQD-------ISNITFVEGEKGIIVIDPLVTPPAAKAALDLYFQHRPKPIVAVIYTHSHTDHYGGVADVKSGKVQVIAPAGFMDEAISEGDPSIIAPTKTIVRTGEKMIIDGLEFDFTPGSEAPAEMHFYIPALKALCTAENATHTNFYTLRGAKTRDTSKWTEYLNETLDMWGNDAEVLPVWGNKHINDYIGKYRDTIKYIHDQT... 354

FFAS is supported by the NIH grant R01-GM087218-01
1 0 8 9 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.