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Query: 3r2u_A mol:protein length:466 Metallo-beta-lactamase family protein, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSGVDLGTENLYFQSNAMFFKQFYDKHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNANIYVSGESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKQMFKSIESIKDLPDYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAFSENNEATFIDKLISDQPAPPHHFAQMKKINQFGMNLYQPYTVYPATNTNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEINLIGDYHLVSKATHTLQLIGYDDIAGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQLSLast
1 -145.0003r2u_A mol:protein length:466 Metallo-beta-lactamase family protein  ali model  100  1MSSGVDLGTENLYFQSNAMFFKQFYDKHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLNANIYVSGESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKQMFKSIESIKDLPDYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAFSENNEATFIDKLISDQPAPPHHFAQMKKINQFGMNLYQPYTVYPATNTNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQIGWYLNYDQEINLIGDYHLVSKATHTLQLIGYDDIAGYQLPQSKIQTRSIHSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKDIQLS 460
2 -135.0003tp9_A mol:protein length:474 BETA-LACTAMASE and RHODANESE DOMAIN PROTEIN  ali model follow..  41  1...............SNAMYLRRFYDEGLAHASYLVGCQETGEACVIDPARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRAGAAICVSDEGPPEWKSEYVAYPHRLLKDGDELHFGNVRIVVMHTPGHTPEHVSYLLYDGKTSPDVPMALFSGDFVFVGDVGRPDLLERVAGESGSSEALARQMFRSLRKFEALPDHVQVLPAHGAGSACGKALGAVPSSTVGYEKLVNWALQHKDEDAFVQALLAGQPEAPIYFARMKLVNKVGPRLLAPPERVRAWREGGVVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGWLLPADRPIHLLAADAIAPDVIRALRSIGIDDVVDWTDPAYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWRGK 468
3 -52.9004ysb_A mol:protein length:233 Metallo-beta-lactamase family protein  ali model follow..  29  1..................MIFRQLFDSESSTYTYLIGDEATRQAVLIDPVLEVDRDLQMVAELDLTLTHVFDTHVHADHITASGALRERTQATVVGSVNGASCAN--------VQVRHGDEVRVGQLVFQVLATPGHTDDSISYLLGDR---------VFTGDALLVRGNGRTDFQNGN----------ASQLYDSLRVLFTLPDETLVYPGH--------DYKGRTVTSIAEEKRHNPRVAGKSREEFIHIMENLNLPRPKLIDAAVPANRACGHTAPSPQ.................................................................................................................................................................................. 231
4 -48.7004chl_A mol:protein length:238 PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL  ali model follow..  24  4...............DAPILLRQMFEPVSCTFTYLLGDRESREAVLIDPVLEAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGA-------QADLHIEDGDSIRFGRFALETRASPGHTPGCVTFVLNDHS-------MAFTGDALLIRGCGRTDFQQGC----------AKTLYHSVEKIFTLPGDCLIYPAH--------DYHGFTVSTVEEERTLNPRLT-LSCEEFVKIMGNLNLPKPQQIDFAVPANMR........................................................................................................................................................................................... 230
5 -47.0002gcu_A mol:protein length:245 Putative hydroxyacylglutathione hydrolase 3  ali model follow..  26  1................MKLLFRQLFENESSTFTYLLADHPDKPALLIDPVDKVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGS---------DLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGE-GADQPQPRMAFTGDAVLIRGCGRTDFQEGS----------SDQLYESVSQIFTLPKDTLIYPAH--------DYKGFEVSTVGEEMQHNPRLT-KDKETFKTIMSNLNLSYPKMIDVAVPANMV........................................................................................................................................................................................... 234
6 -41.4002zwr_A mol:protein length:207 Metallo-beta-lactamase superfamily protein  ali model follow..  24  1..................MRVFPVTLGPLQENAYLVETGE--GPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLDLPGLAIPKPPLPVRPLEEGMRL----FGFQVLHLPGHSPGHVAFYDPEGA-------QVFSGDLLFRGSVGRYDLPGAD-----------KALFASLKRLLSLPPETRVHPGHG------------PGTTLGLEARTNPFLTGLEWEA.................................................................................................................................................................................................................... 207
7 -36.9004efz_A mol:protein length:298 Metallo-beta-lactamase family protein  ali model follow..  21  7....................VEGFFDPATCTISYLLFDSGSGECALIDSVLDYDPLIARVAALGARVRWLLETHVHADHLSAAPYLKTRVGGEIAIGRNAGPAFAHDGSQFD-RLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDRDAAAFVGDTLFMPDYGRCDFPGGD----------ARSLYRSIRKVLSLPPATRLYMCHDYQPN-GRAIQYA--STVADELRENVHIREVTEDDFVRTARDATLDMPVLMLPSVQVNMRAGRLPEPED.................................................................................................................................................................................. 285
8 -35.4004ysk_A mol:protein length:294 Beta-lactamase domain protein  ali model follow..  22  9....................VDAFYDEATSTISYLVMDRETRQCALIDSVLDYDPLVERVNELNASVRWVLETHVHADHLSAAAYLKEKLGGHTAIGANAEPGFARDGSQFD-VLLEDEEGFRIGNLQARALHTPGHTPACMSFMIEDAGEI-----AVFVGDTLFMPDYGRCDFPGAD----------ARTLYRSIRRLLAFPDQTRLFMCHDYLPG-GRDMQYV--TTVAEQRASNIHIHQIDEDSFVREARDKTLEMPVLILPSVQVNMRSGQLPPPEA.................................................................................................................................................................................. 281
9 -34.6002xf4_A mol:protein length:210 HYDROXYACYLGLUTATHIONE HYDROLASE  ali model follow..  29  1..................MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPV-IGPEKEDEFWLQGLPAQSRMLNDGDRVSVGNVTLQVLHCPGHTPGHVVFF-------DEQSQLLISGDVIFKGGVGRSDFPRGD-----------TQLIDAIKKLLPLGDDVTFIPGHG------------PLSTLGYERLHNPFLQD......................................................................................................................................................................................................................... 210
10 -33.6001qh3_A mol:protein length:260 PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE)  ali model follow..  22  12..............................NYMYLVIDDETKEAAIVDPV-QPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGD-------DRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSE--PPAVFTGDTLFVAGCGK--------------EGTADEMCKALEVLGRLPPDTRVYCGH-NNLKFARHVEPGNASTLAEEFTYNPFMRVREKT--VQQHAGETDPVTTMRAVRREKDQ............................................................................................................................................................................................ 254
11 -33.6001gmx_A mol:protein length:108 THIOSULFATE SULFURTRANSFERASE GLPE  ali model follow..  20  2..........................................................................................................................................................................................................................................................................................................................................................................DQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ 99
12 -32.4001xm8_A mol:protein length:254 glyoxalase II  ali model follow..  21  12..............................NYAYILHDEDTGTVGVVDP--EAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVI-----GSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSR-------AIFTGDTMFSLSCGK--------------EGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKALSLEPNTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALGIIRKAK............................................................................................................................................................................................. 251
13 -32.0003k9r_A mol:protein length:115 Alr3790 protein  ali model follow..  23  17.......................................................................................................................................................................................................................................................................................................................................................................................EWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAI 102
14 -31.4003gk5_A mol:protein length:108 Uncharacterized rhodanese-related protein TVG  ali model follow..  23  7..................................................................................................................................................................................................................................................................................................................................................................................NAADLYENIKAYTVLDVREPFELIFGSIANSINIPISELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQSWIEE 95
15 -31.4001tq1_A mol:protein length:129 senescence-associated family protein  ali model follow..  32  20......................................................................................................................................................................................................................................................................................................................................................................................HDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKN 117
16 -30.8003ilm_A mol:protein length:141 Alr3790 protein  ali model follow..  23  12.......................................................................................................................................................................................................................................................................................................................................................................................EWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAI 97
17 -30.7003foj_A mol:protein length:100 uncharacterized protein  ali model follow..  27  3.............................................................................................................................................................................................................................................................................................................................................................................SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPDNLNYFNDNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMDEFGDE 96
18 -30.7002k0z_A mol:protein length:110 Uncharacterized protein hp1203  ali model follow..  20  5.................................................................................................................................................................................................................................................................................................................................................................................YAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFLHKDKKVLLHCRAGRRALDAAKSMHELGYTPY-YLEGNVYDFEKY 96
19 -30.6002p18_A mol:protein length:311 Glyoxalase II  ali model follow..  22  34..............................NFSYLINDHTTHTLAAVDVNADYKPILTYIEEHTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGV-ALFTGDTMFIAGIGA--------------EGDEKDMCRAMEKVYALDKVTFIFPGH-YAAAVKTGDPSVP-SSLAEEKRQNLFLRVADPA..................................................................................................................................................................................................................... 283
20 -30.6003iwh_A mol:protein length:103 Rhodanese-like domain protein  ali model follow..  27  3.............................................................................................................................................................................................................................................................................................................................................................................SITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGI-DAVNVEGGMHAWGDE 96
21 -30.6002kl3_A mol:protein length:132 Alr3790 protein  ali model follow..  23  15.......................................................................................................................................................................................................................................................................................................................................................................................EWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAI 100
22 -29.8005aeb_A mol:protein length:272 LRA-12  ali model follow..  15  22..............RPFRIAGNLYYIGTYDLACYLITTKQGNIIVNTGLAASALQIKNNIKALGFKTKILLTTQAHYDHLGAMAEIKKITGAKLMADEGDATVMADGGSSDYARLLHDKDTIQLGDTKLVMLHHPGHTKGSCSFLFDTKDEQR-------SYRILIANMPT---VIEKKFSEVSSYPGIAKDYAYTLQAMKNLSFDI-WVASHASQFSMHSKHKPGDGYN------PKSFMDRKGYDESLDKLQKEYEK......................................................................................................................................................................................................... 267
23 -29.5002jtq_A mol:protein length:85 Phage shock protein E  ali model follow..  32  2.............................................................................................................................................................................................................................................................................................................................................................................................EHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATADKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDIA.. 79
24 -28.7002p97_A mol:protein length:201 Hypothetical protein  ali model follow..  15  22............................IDFNGFAWIRPE--GNILIDPVALSNHDWKHLESLG-GVVWIVLTN--SDHVRSAKEIADQTYTKIAGPVAEKENFPIY----CDRWLSDGDELVPG---LKVMELQGKTPGELALLLEET--------TLITGDLVRAYRAGGLEILPDEKLMNKQK------VVASVRRLAALEKVEAVLVGDGWSVFRDGR.............................................................................................................................................................................................................................................. 190
25 -28.7001yt8_A mol:protein length:539 thiosulfate sulfurtransferase  ali model follow..  6.........................IAVRTFHDIRAALLARRELALLD-VREEDPFAQAHPLFAANLPL-------SRLELEIHARVPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRDVNVPSKAFGELVEAERHTPSLARAEAVILDA-RRFDEYQTMSIPGGISVPGAELVLRVAELAPDPRTRVIVNCAGRTRS---IIGTQSLLNAGIPNPVGWTLAGQQLEHGQTRRFGAISQDTRKAAARAVADRAGVERLDLAGLAQWQDEHDYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVASVRGARLVLVDDDGRANMSASWLAQMGWQVAV-LDGLSEADFSERGAWSALGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAA 471
26 -28.6005iqk_A mol:protein length:271 beta-lactamase Rm3  ali model follow..  15  24.......................YYVGMKGLSSVLVTSPQG--HVLIDGPESAPKIIANIGALGFRVKLILNSHGHIDHAGGLAELQRRSNALVAASPSAALDLASGEVGPDDRLARDGGQFNVGPVYLTAHATPGHTPGGLSWTWQSCDGPR-------CLNMVYADSINAVSRPGFKFSASSEYPNALADLRHSFETLEKLPCDVLI-SAHPEASQLWQRLEASATGG------SDAFVDPQACRAYVAAART............................................................................................................................................................................................................. 259
27 -28.5002moi_A mol:protein length:108 Inner membrane protein YgaP  ali model follow..  18  6.................................................................................................................................................................................................................................................................................................................................................................................SPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSLPAKLRHEQIIFHCQAGKRTSNNADKLAIAAPAEIFLLEDGIDGWKKA 98
28 -28.5002mrm_A mol:protein length:114 Membrane protein  ali model follow..  18  8.................................................................................................................................................................................................................................................................................................................................................................................SPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLSVLEQSLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAPAEIFLLEDGIDGWKRA 100
29 -28.4001qxn_A mol:protein length:137 sulfide dehydrogenase  ali model follow..  14  1......................................................................................................................................................................................................................................................................................................................................................ADMGEKFDATFKAQVKAAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPNYKHMSRGKLEPLLAKLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEE 123
30 -28.2001wv9_A mol:protein length:94 Rhodanese Homolog TT1651  ali model follow..  19  10......................................................................................................................................................................................................................................................................................................................................................................................PALLEEGVLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGLP-RRPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQALTQG 93
31 -27.9001jt1_A mol:protein length:263 FEZ-1, class B3 metallo-beta-lactamase  ali model follow..  14  13............................IAGNLYYVGTDDLASYLIVTPRANVPMIKASIKKLGFKTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILSGGKSDFHKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGK-------QYQAVIIGSIGVNP--GYKLVDNITYPKIAEDYKHSIKVLESMRCDIFL-GSHAGMFDLKNKYVLLS------KGQNNPFVDPTGCKNYIEQKAN............................................................................................................................................................................................................. 251
32 -27.6003adr_A mol:protein length:261 Putative uncharacterized protein ST1585  ali model follow..  16  21...............................TVYVMCGEK--LTVMIDAGVSNSIADFSFLDK---LDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLVDD---------FLFTGDSAGA-------YFNGVVIPTTPPVIDYKMYMESLKRQIELKPKV-VGFAHGGLVSPKIMEEHLKQMLSKEEIQINVDIGGVAGEILRKQIEVNLRG......................................................................................................................................................................................................... 253
33 -27.4003vpe_A mol:protein length:262 Metallo-beta-lactamase  ali model follow..  14  19.......................HYVGTGGISAVLLSSPQG--HILVDGEKGAQVVAANIRAMGFKVKYILSTHSHEDHAGGISAMQKLTGATVLAGAANVDTLRTGVSPKSDRAVADGELVKLGPLAVKAHATPGHTEGGITWTWQSCEQGK-------CKDVVFADSLT---AVSADSYRFSDHPEVVASLRGSFEAVEKLSCDIAI-AAHPEVNDMWTRQQRAAKEG------NSAYVDNGACRAIAAAGRK............................................................................................................................................................................................................. 251
34 -27.3003d1p_A mol:protein length:139 Putative thiosulfate sulfurtransferase YOR285  ali model follow..  18  35.......................................................................................................................................................................................................................................................................................................................................................................................GKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSH 132
35 -26.7001sml_A mol:protein length:269 PROTEIN (PENICILLINASE)  ali model follow..  15  31.......................WQIGTEDLTALLVQTPDG--AVLLDGPQMASHLLDNMKARGVTLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNG-------KPVRIAYADSLSAPGY---QLQGNPRYPHLIEDYRRSFATVRALPCDVLL-TPHPG------------ASNWDYAAGARAGAKALTCKAYADAAEQKFDG......................................................................................................................................................................................................... 259
36 -26.1003lvz_A mol:protein length:294 Blr6230 protein  ali model follow..  13  48.......................YYVGTDGIAVYVIKTSQG--LILMDTTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGGYYPGDERAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKE-------DREVLFFCSGT---VALNRLVGQPTYAGIVDDYRATFAKAKAMKIDVLL-GPHPEVYGMQAKRAEMK------DGAPNPFIKPGELVTYATSLSE............................................................................................................................................................................................................. 278
37 -26.1002qed_A mol:protein length:258 Hydroxyacylglutathione hydrolase  ali model follow..  19  3...............ADIGSMNLNSIPAFQDNYIWVLTNDEGRCVIVDP--EAAPVLKAIAEHKWMPEAIFLT----DHVGGVKELLQHFPQMTVYGPAETQ------DKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYF---------SRPYLFCGDTLFSGGCGR--------------EGTPSQMYQSLMKINSLPDDTLICCAH-ANIKFALSILPHDSVILKNERKINLFLRTEDID..................................................................................................................................................................................................................... 226
38 -23.8004p62_A mol:protein length:295 Metallo-beta-lactamase AIM-1  ali model follow..  13  46............................VYGNTWYVGTCSDAGHILVDAGPQILANIRALGFRPEDVRAIVLSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDVTLADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDC--RQMVYADSLTAISDDVYRYSDDAA-----HPGYLAAFRNTLARVAALDCDILV-TPHPSASGLWNRIGPRAAAPLMDTTACRRYAQGA-RQRLEKRLAEEAAA......................................................................................................................................................................................................... 295
39 -23.7003i2v_A mol:protein length:127 Adenylyltransferase and sulfurtransferase MOC  ali model follow..  24  2.............................................................................................................................................................................................................................................................................................................................................................................RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESGAAVPIYVICKLGNDSQKAVKILQSLSAATVRDVVGGLMAWAAK 119
40 -23.7002q0j_A mol:protein length:321 Quinolone signal response protein  ali model follow..  13  38................................VFLL--LGEASWALVEGAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLNVQVLASERTCQAWKCAWDALPVRAVADGEWLELGPHRLQVIEAHGHSDDHVVFYDVRRR-------RLFCGDALGE-------FDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTECLRLCRRLLWRQSMGESLDELSEELHR--AWGGQSVDFLPGELHLGSMRRMLEILSRQALPLD..................................................................................................................................................................... 315
41 -23.5004awy_B mol:protein length:303 METALLO-BETA-LACTAMASE AIM-1  ali model follow..  13  46............................VYGNTWYVGTCSDAGHILVDAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDVTLADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDC--RQMVYADSLTAISDDVFRYSDDAA-----HPGYLAAFRNTLARVAALDCDILV-TPHPSASGLWNRIGPRAAAPLMDTTACRRYAQGA-RQRLEKRLAEEAATSPS...................................................................................................................................................................................................... 298
42 -23.5003flh_A mol:protein length:124 uncharacterized protein lp_1913  ali model follow..  14  24....................................................................................................................................................................................................................................................................................................................................................................................ADMQNATGKYVVLDVRNPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTGKTALLVLLSAGF-EAYELAGALEGWKGM 113
43 -23.4002hhg_A mol:protein length:139 Hypothetical protein RPA3614  ali model follow..  15  11..................................................................................................................................................................................................................................................................................................................................................KAMLDEANSSIETLTTADAIALHKSG--------------ASDVVIVDIRDPREIEDGKIPGSFSCTRGMLEFWIDPFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDA 127
44 -23.3003fnj_A mol:protein length:130 protein lp_1913  ali model follow..  14  24....................................................................................................................................................................................................................................................................................................................................................................................ADMQNATGKYVVLDVRNPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTGKTALLVLLSAGF-EAYELAGALEGWKGM 113
45 -21.9004ad9_A mol:protein length:289 BETA-LACTAMASE-LIKE PROTEIN 2  ali model follow..  21  31.............................GTNTYLVG-TGPRRILIDTGEPAIPEYISALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEEN-------AIFSGDCIL--------------GEGTTVFEDLYDYMNSLKELLKIKADI-IYPGHGP-HNAEAKIQQYISHRNIREQQILTLFRENFEKELVKIIYKNTPEKHNLLLHLKKLEKEG.......................................................................................................................................................................................... 273
46 -21.8002eg3_A mol:protein length:230 Probable thiosulfate sulfurtransferase  ali model follow..  17  2.............................................................................................................................................................................................................................................................................................NLPEDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLRE--LGLRSPVVLYDEGLTSRLCRTAFFLGLGGLEVQLWTEGWEPYATELLTADEAARHPLLLDVRSPEEFQGGRIPGSKNAPLELFLSERLGLQPGQEVGVYCHSGARSAVAFFVLRSLGV-RARNYLGSMHEWLQ. 223
47 -21.5001t3k_A mol:protein length:152 Dual-specificity tyrosine phosphatase  ali model follow..  19  17........................................................................................................................................................................................................................................................................................................................................................................MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLKDKDTLVFHSASQVRGPTCAEKKEDTGIKNIMILERGFNGWEAS 129
48 -20.5001a7t_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  19  37.............................SNGMIVINNHQ---AALLDDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRK-GVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGHATDNIVVWLPTEN-------ILFGGCMLKDN---------QTTSIGNISDADVTAWPKTLDKVKAKPSARYVVPGHGN..................................................................................................................................................................................................................................................... 208
49 -20.4001znb_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  20  37.............................SNGMIVINNHQ---AALLDDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKK-GVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGHATDNIVVWLPTEN-------ILFGGCMLKDN---------QATSIGNISDADVTAWPKTLDKVKAKPSARYVVPGHGD..................................................................................................................................................................................................................................................... 208
50 -20.4003l6n_A mol:protein length:219 metallo-beta-lactamase  ali model follow..  17  31.............................ANSMYLVTKKG---VVLFDKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNK-GIKTYATAKTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLEGHTADNVVVWFPKYN-------VLDGGCLVKSN---------SATDLGYIKEANVEQWPKTINKLKAKSKATLIIPGH--DEWKGGGHVEHTLELLNKK.................................................................................................................................................................................................................................. 219
51 -20.2004f6h_A mol:protein length:236 Beta-lactamase  ali model follow..  20  33.............................KHGLVVLVNAE---AYLIDTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSR-SIPTYASELTNELLKKDGKVQATNSF-SGVNYWLVKNKIEVFYPPGHTPDNVVVWLPERK-------ILFGGGFIKPYGLG-------------LGDANIEAWPKSAKLLKSKGKAKLVVPSHSE..................................................................................................................................................................................................................................................... 199
52 -20.2001e0c_A mol:protein length:271 SULFURTRANSFERASE  ali model follow..  17  10....................................................................................................................................................................................................................................................................................VIEPADLQARLSAELILVDLTSAARYAEGHIPGARFVDPKEQLESLFGELHRPEAVYVVYDDEGGAGRFIWLLDVIGQQRYH-YLNGGLTAWLAEDRPLSLGAADLAIWDARSPQEYRGGHIPGAVNFEWTAAMDPSRAITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGN. 263
53 -20.1004wd6_A mol:protein length:233 Metallo-beta-lactamase  ali model follow..  17  5.....................PELRIEKVKENIFLHTSYDKGNAFIVDTPRDTETLVHWIRKNGYELLGSVSTHWHEDRTAGIKWLNDQ--SISTYATTSTNHLLKENKKEPAKYTLKGNESTLVDGLIEVFYPGGHTIDNVVVWLPKSK-------ILFGGCFVRSLD---------SEGLGYTGEAHIDQWSRSAQNALSRSEAQIVIPGHGK..................................................................................................................................................................................................................................................... 202
54 -19.7003o3w_A mol:protein length:126 BH2092 protein  ali model follow..  17  27....................................................................................................................................................................................................................................................................................................................................................................................IDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTKRLSKEKVIITYCWGPA-ATKAAAKFAQLGFR-VKELIGGIEYWRKE 116
55 -19.6001m2x_A mol:protein length:223 class B carbapenemase BlaB-1  ali model follow..  20  27.............................ANAVYLVTDKG---VVVIDEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKI-GAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPKGHTADNVVVWFPKEK-------VLVGGCIIKSADSKDLGYIGEAY---------VNDWTQSVHNIQQKSGAQYVVAGHDD..................................................................................................................................................................................................................................................... 198
56 -19.2002nze_A mol:protein length:222 Beta-lactamase II  ali model follow..  18  36.............................SNGLVLNTSKG---LVLVDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKER-GIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPKGHTEDNIVVWLPQYN-------ILVGGSLVKST---------SAKDLGNVADAYVNEWSTSIENVLKRRNINAVVPGHGE..................................................................................................................................................................................................................................................... 207
57 -19.2004ubq_A mol:protein length:229 Beta-lactamase  ali model follow..  17  34.............................KHGLVVLVNTD---AYLIDTATDTEKLVNWFVERGYKIKGTISSHFHSDSTGGIEWLNSQ-SIPTYASELTNELLKKDGKVQAKNSF-SGVSYWLVKNKIEVFYPPGHTQDNVVVWLPEKK-------ILFGGCFVKPDGLG-------------LGDANLEAWPKSAKILMSKVKAKLVVSSHSE..................................................................................................................................................................................................................................................... 200
58 -19.2003nhv_A mol:protein length:144 BH2092 protein  ali model follow..  17  25....................................................................................................................................................................................................................................................................................................................................................................................IDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINEDTKRLSKEKVIITYCWG---ATKAAAKFAQLGFR-VKELIGGIEYWRKE 114
59 -19.0002ynt_B mol:protein length:233 GIM-1 PROTEIN  ali model follow..  22  33.............................SNGLVVLDNNQ---AYIIDTPEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSK-SIPTYTSELTKKLLAREGKPVPTHYFKD-DEFTLGNGLIELYYPAGHTEDNIVAWLPKSK-------ILFGGCLVRSH---------EWEALGYVGDASISSWADSIKNIVSKYPIQMVVPGHGK..................................................................................................................................................................................................................................................... 202
60 -18.9002uyx_A mol:protein length:228 BETA-LACTAMASE II  ali model follow..  14  1..ASQKVEKTVIKNETGTISISQLNKNVPSNGLVLNTSKG---LVLVDDKLTKELIEMVEKKFQKRVTDVIITHAHASRIGGIKTLKER-GIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPKGHTEDNIVVWLPQYN-------ILVGGCLVKST---------SAKDLGNVADAYVNEWSTSIENVLKYRNINAVVPGHGE..................................................................................................................................................................................................................................................... 213
61 -18.9002zo4_A mol:protein length:317 Metallo-beta-lactamase family protein  ali model follow..  21  24................................LYLL--QGAGEVALVDTRGALELHLAELGLCFQDVKTILLTHHHPDHY-GLSGFFEGLGARVFLHEEEEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEG-------VLLAGDALL------EKVSPNVGLWAYTRENPLKDFLRSLDRLADLGARV-AYAGHF...................................................................................................................................................................................................................................................... 234
62 -18.6001ztc_A mol:protein length:221 hypothetical protein TM0894  ali model follow..  20  30...............................TVVYL--EHKDRRIIIDPMDELEEKFSELGISPDDITDVLFTHVHLDHIFN---SVLFENATFYVHEVVGRIYSKVISSWKNVVLLKGEESLFDE-KVKVFHTPWHAREHLSFLLDTEN----------AGRVLITGDI----TPNRLSYYDIIKGYGSVQVKNFLDRVGRID---LLVFPHDA..................................................................................................................................................................................................................................................... 207
63 -18.3003fcz_A mol:protein length:222 Beta-lactamase 2  ali model follow..  18  36.............................SSGLVLNTSKG---LVLVDDKLTKELIEMVEKKFQKRVTDAIITHAHADRIGGIKTLKER-GIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPKGHTEDNIVVWLPQYN-------ILVGGCLVKST---------SAKDLGNVADAYVNEWSTSIENVSKYRNINAVVPSHGE..................................................................................................................................................................................................................................................... 207
64 -18.2003p3a_A mol:protein length:320 Thiosulfate sulfurtransferase  ali model follow..  18  5.....................................................................................................................................................................................................................................................TLEAQTQGPGSMVSLPADPSPELKQYAHPERLVTADWLASNLGRPGLIVESDDVLLYDTGHIPGAVKIDWHTDLNDMDRKGVTRDDTVVIYGDKSNWWAAYA-FHLFGHPDVRLL-DGGRDLWVSTGRDTTLEVGKEPLIDVRSPQEYTGGHIPTAVSVPRAELEEIYGFVKPDDKPIVYCRIGERSSHTWFVLTY-GHPNVRNYDGSWTEWGNA 296
65 -18.0005a87_A mol:protein length:248 METALLO-BETA-LACTAMASE VIM-5  ali model follow..  15  9.GEPSGEYPTVNEIPVGEVRLYQIADGVWSHIAT----RDGDELLLIDAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRKA-GVATYASPSTRRLAEAEGNEIPTHLSSSGDAVRFGPVEL-FYPGAAHSTDNLVVYVPSAN-------VLYGGCAVLAL---------SRTSAGNVADADLAEWPTSVERIQKHPEAEVVIPGHGL..................................................................................................................................................................................................................................................... 224
66 -18.0004bp0_A mol:protein length:250 METALLO-B-LACTAMASE  ali model follow..  17  20...............DSDVFVVTDRDFYSSNVLVAKMLD--GTVVIVSNLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKM-GAETWSSDLTKQLSSHPVPADNVFDLKQGKVFSFSNELVEVSFPPAHSPDNVVVYFPKKK-------LLFGGCMIKPKELG-------------LGDANVKAWPDSARRLKKFDAKIVI-PGHGE..................................................................................................................................................................................................................................................... 227
67 -18.0003rkk_A mol:protein length:237 Beta-lactamase NDM-1  ali model follow..  15  42.............................SNGLIVRDGGR---VLVVDDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA-GIATYAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYP--PGHTSDNITVGIDGTD-------IAFGGCLIKDS---------KAKSLGNLGDADTEHYAASARAFGAAPKASMIVMSH--SAPDSRAAITHTARMADKLR................................................................................................................................................................................................................................. 237
68 -17.9004tyf_A mol:protein length:231 NDM-4  ali model follow..  15  36.............................SNGLIVRDGGR---VLVVDDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA-GIATYAPQEGLVAAQHSLTFAANGWVEPATAPNFGPLKVFYP--PGHTSDNITVGIDGTD-------IAFGGCLIKDS---------KAKSLGNLGDADTEHYAASARAFGAAPKASMIVMSH--SAPDSRAAITHTARMADKLR................................................................................................................................................................................................................................. 231
69 -17.9005acp_A mol:protein length:250 GIM-1 PROTEIN  ali model follow..  22  50.............................SNGLVVLDNNQ---AYIIDTEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSK-SIPTYTSELTKKLLAREGKPVPTHYFKD-DEFTLGNGLIELYYPAGHTEDNIVAWLPKSK-------ILFGGCLVRSH---------EREGLGYVGDASISSWADSIKNIVSKYPIQMVVPGHGK..................................................................................................................................................................................................................................................... 219
70 -17.8003hzu_A mol:protein length:318 Thiosulfate sulfurtransferase sseA  ali model follow..  17  5.....................................................................................................................................................................................................................................................TLEAQTQGPGSMPLPADPSPTLSAYAHPERLVTADWLSAHMGAPGLAIVESDDVLLYDVGHIPGAVKIDWHTDLNDMDRKGIARDDTVVIYGDKSNWWAAYA-FTLFGHADVR-LLNGGRDLWLAERRETTLDVGAQPLIDVRSPEEYTAGHIPTAVHIPREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTH-GKADVRNYDGSWTEWGNA 295
71 -17.7004gyq_A mol:protein length:243 Beta-lactamase NDM-1  ali model follow..  15  48.............................SNGLIVRDGGR---VLVVDDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA-GIATYAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYP--PGHTSDNITVGIDGTD-------IAFGGCLIKDS---------KAKSLGNLGAADTEHYAASARAFGAAPKASMIVMSH--SAPDSRAAITHTARMADKLR................................................................................................................................................................................................................................. 243
72 -17.6003spu_A mol:protein length:265 Beta-lactamase NDM-1  ali model follow..  16  49.............................SNGLIVRDGGR---VLVVDDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA-GIATYAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYP--PGHTSDNITVGIDGTD-------IAFGGCLIKDS---------KAKSLGNLGDADTEHYAASARAFGAAPKASMIVMSHSA..................................................................................................................................................................................................................................................... 226
73 -17.6004uwo_B mol:protein length:266 METALLO-BETA-LACTAMASE VIM-26  ali model follow..  17  69.............................SNGLIVRDGDE---LLLIDAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAA-GVATYASPSTRRLAEAEGNEIPTHLSSSGDAVRFGPVELFYP--AAHSTDNLVVYVPSAN-------VLYGGCAVLEL---------SSTSAGNVADADLAEWPTSVERIQKHPEAEVVIPGH--GLPGGLDLLQHTANVVKAHKN................................................................................................................................................................................................................................ 261
74 -17.5005a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1  ali model follow..  16  48.............................SNGLIVRDGGR---VLVVDDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA-GIATYAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYP--PGHTSDNITVGIDGTD-------IAFGGCLIKDS---------KAKSLGNLGDADTEHYAASARAFGAAPKASMIVMSHSA..................................................................................................................................................................................................................................................... 225
75 -17.4004rl2_A mol:protein length:246 Beta-lactamase NDM-1  ali model follow..  15  51.............................SNGLIVRDGGR---VLVVDDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAA-GIATYAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYP--PGHTSDNITVGIDGTD-------IAFGGCLIKDS---------KAKSLGNLGDADTEHYAASARAFGAAPKASMIVMSH--SAPDSRAAITHTARMADKLR................................................................................................................................................................................................................................. 246

FFAS is supported by the NIH grant R01-GM087218-01
1 0 9 9 8 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.