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Query: 4uwo_B mol:protein length:266 METALLO-BETA-LACTAMASE VIM-26, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLKVISSLLVYMTASVMAVASPLAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEAEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVLELSSTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVKAHKNRSVAELast
1 -101.0004uwo_B mol:protein length:266 METALLO-BETA-LACTAMASE VIM-26  ali model  100  1MLKVISSLLVYMTASVMAVASPLAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEAEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVLELSSTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVKAHKNRSVAE 266
2 -100.0002yz3_A mol:protein length:266 Metallo-beta-lactamase  ali model follow..  90  1MFKLLSKLLVYLTASIMAIASPLAFSVDSSGEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRSVVE 266
3 -97.9002y87_A mol:protein length:265 METALLO-B-LACTAMASE  ali model follow..  76  1.MFQIRSFLVGISAFVMAVLGSAAYSAQPGGEYPTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKALSSSGDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHGLPGGLELLQHTTNVVKTHKVRPVAE 265
4 -97.4005a87_A mol:protein length:248 METALLO-BETA-LACTAMASE VIM-5  ali model follow..  97  1..................GPSPLAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRKAGVATYASPSTRRLAEAEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVLALSRTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVTAHKNRSVAE 248
5 -90.0004exs_B mol:protein length:272 Beta-lactamase NDM-1  ali model follow..  32  6IMHPVAKLSTALAAALMLSGCMPGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRL..... 271
6 -89.7003rkk_A mol:protein length:237 Beta-lactamase NDM-1  ali model follow..  35  1............................SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 237
7 -89.0004gyq_A mol:protein length:243 Beta-lactamase NDM-1  ali model follow..  34  1......................SNAIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGAADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 243
8 -88.9005a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1  ali model follow..  34  1......................MGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRLE.... 245
9 -88.7004rl2_A mol:protein length:246 Beta-lactamase NDM-1  ali model follow..  34  1...................GSHMGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 246
10 -88.3002uyx_A mol:protein length:228 BETA-LACTAMASE II  ali model follow..  37  1...........................ASQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHASRIGGIKTLKERGIKAHSTALTAELAKKNGYEEP----LGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK......... 228
11 -88.2004tyf_A mol:protein length:231 NDM-4  ali model follow..  36  1..................................GPGDQRFGDLVFRQLAPNVWQHTSYLDMPGGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGLVAAQHSANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 231
12 -88.1003spu_A mol:protein length:265 Beta-lactamase NDM-1  ali model follow..  33  2......................PGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRKLVPR. 249
13 -88.0002nze_A mol:protein length:222 Beta-lactamase II  ali model follow..  38  1.................................KTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTAELAKKNGYEEP----LGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK......... 222
14 -87.5003fcz_A mol:protein length:222 Beta-lactamase 2  ali model follow..  38  1.................................KTVIKNETGTISISQLNKNVWVHTELGSFNGEAVPSSGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDAIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEP----LGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVSKRYRNINAVVPSHGEVGDKGLLLHTLDLLK......... 222
15 -86.7001m2x_A mol:protein length:223 class B carbapenemase BlaB-1  ali model follow..  26  1..........................................DVKIEKLKDNLYVYTTYNTFNGTKYAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKPRA----QYTFDNNKSFKVGKFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLINEYQQKQKA. 221
16 -86.1003l6n_A mol:protein length:219 metallo-beta-lactamase  ali model follow..  27  2.......................................VKDFVIEPPIKNNLHIYKTFGVFGGKEYSANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGKATS----TEIIKTGKPYRIGGFVVDFLGEGHTADNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIPGHDEWKGGGHVEHTLELLNK........ 218
17 -85.9001znb_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  30  1.................................AQKSVKISDDISITQLSDKVYTYVSLAEIEGGMVPSNGMIVINNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLPVP----EHGFTDSLTVSLDGLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGDYGGTELIEHTKQIVNQYIESTSK. 231
18 -85.9001a7t_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  30  1.................................AQKSVKISDDISITQLSDKVYTYVSLAEIEGGMVPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKGLPVP----EHGFTDSLTVSLDGLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGNYGGTELIEHTKQIVNQYIESTSK. 231
19 -81.8004wd6_A mol:protein length:233 Metallo-beta-lactamase  ali model follow..  32  1.....................................NDEVPELRIEKVKENIFLHTSYSRVNGFGVSSNGLVVIDKGNAFIVDTPWSDRDTETLVHWIRK-NGYELLGSVSTHWHEDRTAGIKWLNDQSISTYATTSTNHLLKENKKE-----PAKYTLKGNESTLVDIEVFYPGGGHTIDNVVVWLPKSKILFGGCFVRSLDSEGLGYTGEAHIDQWSRSAQNALSRYSEAQIVIPGHGKIGDIALLKHTKSLAETASNKSIQ. 225
20 -80.6002ynt_B mol:protein length:233 GIM-1 PROTEIN  ali model follow..  33  1.....................................SQGHKPLEVIKIEDGVYLHTSFKNIEGGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATD-RGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFK-----DDEFTLGNIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEALGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNKLMQ. 225
21 -80.0004ubq_A mol:protein length:229 Beta-lactamase  ali model follow..  29  1....................................AGARLPDLKIEKLEEGVYVHTSFEEVNGWGVSKHGLVVLVNTDAYLIDTPFTATDTEKLVNWFVE-RGYKIKGTISSHFHSDSTGGIEWLNSQSIPTYASELTNELLKKDGKVQAKNSF-----SGVSYWLVKIEVFYPGPGHTQDNVVVWLPEKKILFGGCFVKPDGLGNLG---DANLEAWPKSAKILMSKYVKAKLVVSSHSEIGDASLLKRTWEQAVKGLNESKK. 223
22 -79.7005acp_A mol:protein length:250 GIM-1 PROTEIN  ali model follow..  32  1MKNVLVFLILLVALPALA--------------------QGHKPLEVIKIEDGVYLHTSFKNIEGYGVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATD-RGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFK-----DDEFTLGNIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEREGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNKLMQ. 242
23 -79.5001x8h_A mol:protein length:228 Beta-lactamase  ali model follow..  26  1.........................................AGMSLTQVSGPVYVVE-----DNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWAELPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCILKEK----LGNLSFADVKAYPQTLERLKAMKLPIKTVIGGHDSPHGPELIDHYEALIKAAPQSS... 228
24 -79.4004f6h_A mol:protein length:236 Beta-lactamase  ali model follow..  30  1.....................................AESLPDLKIEKLDEGVYVHTSFEEVNGWGVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVE-RGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSF-----SGVNYWLVKIEVFYPGPGHTPDNVVVWLPERKILFGGGFIKPYGLGNLG---DANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKK. 222
25 -77.0003q6v_A mol:protein length:233 Beta-lactamase  ali model follow..  21  1......................................MSEKNLTLTHFKGPLYIVED-----KEYVQENSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGSLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHTKDGIFVYFPAERVLYGNCILKEN----LGNMSFANRTEYPKTLEKLKGLIEKVDSIIAGHDTPHDVGLIDHYLTLLEKAPK..... 233
26 -75.3004bp0_A mol:protein length:250 METALLO-B-LACTAMASE  ali model follow..  27  2...............................PKSSDHVDLPYNLTATKIDSDVFVVT-----DRDFYSSNVLVAKMLDGVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRIKANVFDLKQGKVFSFSNVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGYLG---DANVKAWPDSARRLKKF--DAKIVIPGHGEWGGPEMVNKTIKVAEKAVGEMR.. 249
27 -36.8003lvz_A mol:protein length:294 Blr6230 protein  ali model follow..  15  1MRR------LTAALCALTLLSTGAQAQTIKDFLAVAMKKWTAPFEPFQLIDNIYYV--------GTDGIAVYVIKTSQGLILMDTAM-PQSTGMIKDNIAKL--ADIKLILNTHAHLDHTGGFAEIKKEGAQLVAGERDKPLLEGEDLAFPAVKVDRAVKEGDRVTLGDTTLAHATPGHSPGCTSWEMTVKDVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAM--KIDVLLGPHPEVYG..................... 247
28 -36.6002zwr_A mol:protein length:207 Metallo-beta-lactamase superfamily protein  ali model follow..  22  11..................................................................LQENAYLVETGEGPVLIDPGDE---PEKLLALFQTT-GLIPLAILLTHAHFDHVGAVAPLVEADLPVYLHPLDLPLYEGADLAPKPPLPVRPLEEGMRL---GFQVLHL-PGHSPGHVAFYDPEGAQVFSGDLLFRGSV-GRYDLPGADPKALFASLKRLLSL-PPETRVHPGHGPGTTLGLEARTNPFLTGLEWEA... 207
29 -36.3001sml_A mol:protein length:269 PROTEIN (PENICILLINASE)  ali model follow..  16  1.......................AEVPLPQLRAYTVDASWLQPMAPLQIADHTWQI--------GTEDLTALLVQTPDGAVLLDGGM-PQMASHLLDNMKARTPRDLRLILLSHAHADHAGPVAELKRRGAKVAANAESAVLLARGGSDYPPANADRIVMDGEVITVGGIVFAHFMAGHTPGSTAWTWTDTRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRAL--PCDVLLTPHPGASNWDYAAGARAGAKALTCKAYAD 251
30 -35.7004p62_A mol:protein length:295 Metallo-beta-lactamase AIM-1  ali model follow..  14  1MKRRF---TLLGSVVALALSSTALASDAPASRGCADDAGWNDPAMPQKVYGNTWYV--------GTCGISALLVTSDAGHILVDAAT-PQAGPQILANIRALRPEDVRAIVLSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGAEPVAPVANIVTLADDGVVSVGPLALAVASPGHTPGGTSWTWRDCRQMVYADSLTAISDDVYRYSDDGYLAAFRNTLARVAAL--DCDILVTPHPSASGRRYAQGARQRLEKRLAEEAA. 294
31 -35.5004awy_B mol:protein length:303 METALLO-BETA-LACTAMASE AIM-1  ali model follow..  14  1MKRRF---TLLGSVVALALSSTALASDAPASRGCADDAGWNDPAMPLKVYGNTWYV--------GTCGISALLVTSDAGHILVDAAT-PQAGPQILANIRALRPEDVRAIVFSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGAEPVAPVANIVTLADDGVVSVGPLALAVASPGHTPGGTSWTWRDCRQMVYADSLTAISDDVFRYSDDGYLAAFRNTLARVAAL--DCDILVTPHPSASGRRYAQGARQRLEKRLAEEAAT 295
32 -35.1002p97_A mol:protein length:201 Hypothetical protein  ali model follow..  15  6................................................HRPDLYSWSTFNPARN--IDFNGFAWIRPEGNILIDPVALSNHDWKHLESLGG-----VVWIVLTN--SDHVRSAKEIADQYTKIAGPVAEKENFPIY--------CDRWLSDGDELVPGLKVMELQG-SKTPGELALLLEE-TTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLLEKVEAVLVGDGWSVFRDGRDRLKELVATLA...... 201
33 -34.9002q0j_A mol:protein length:321 Quinolone signal response protein  ali model follow..  18  5............................................SSGLVPRGSHMLLDDDLCLLGDVQVPVFLLRGEASWALVEGGIS-RDAELVWADLCRADPSQVHYWLITHKHYDHCGLLPYLCPRNVQVLASERTCQAWKSESACAWDALPVRAVADGEWLELGPRHRLQVAHGHSDDHVVFYDVRRRRLFCGDALFDEAEGVWRPLVFDDMEAYLESLERLQRL-PTLLQLIPGHGGLLRGRLAADGAESAYTECLRLCRR 261
34 -34.6002zo4_A mol:protein length:317 Metallo-beta-lactamase family protein  ali model follow..  19  1.............................................MKALLPGLYLLPVPIPYPLKTV--NLYLLQGAGEVALVDTALGTRAARGALELHLAELGQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAENPLKDFLRSLDRLADL--GARVAYAGHFGP--EELKAHHQARLEALLALLDGP 265
35 -33.5001jt1_A mol:protein length:263 FEZ-1, class B3 metallo-beta-lactamase  ali model follow..  10  5........................................PNPFPPFRIAGNLYYV--------GTDDLASYLIVTPRGNILINSDLE-ANVPMIKASIKKLKFSDTKILLISHAHFDHAAGSELIKQQKAKYMVMDEDVSVILSGGKSFTQSTVDKVLHDGERVELGGTVLAHLTPGHTRGCTTWTMKLKDAVIIGSIGVNPGYKLVDNITPKIAEDYKHSIKVLESM--RCDIFLGSHAGMFD..................... 220
36 -33.5003vpe_A mol:protein length:262 Metallo-beta-lactamase  ali model follow..  14  6........................................SSPQQPFTIYGNTHYV--------GTGGISAVLLSSPQGHILVDGT-TEKGAQVVAANIRAM--SDVKYILSTHSHEDHAGGISAMQKLGATVLAGAANVDTLRTGVSPFPGSAKVRAVADGELVKLGPLAVAHATPGHTEGGITWTWQSCEVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKL--SCDIAIAAHPEVND..................... 220
37 -32.7005aeb_A mol:protein length:272 LRA-12  ali model follow..  10  2........................MASQKVKEPTVSNADWSKPYRPFRIAGNLYYI--------GTYDLACYLITTKQGNIIVNTGLA-ASALQIKNNIKAL--TDTKILLTTQAHYDHLGAMAEIKKIGAKLMADEGDATVMADHGSMFEPIIADRLLHDKDTIQLGDTKLMLHHPGHTKGSCSFLFDTKDILIANMPIVIEKKFSEVSSYPGIAKDYAYTLQAMKNL--SFDIWVASHASQFS..................... 232
38 -32.6003adr_A mol:protein length:261 Putative uncharacterized protein ST1585  ali model follow..  11  20....................................................................ATVYVMCGEKLTVMIDAGVSNSIADFSFLD-------KLDYIVLTHLHIDHIGLLPELLQVKAKVLVKSGFKKYLTSEDGLKKLNESAEEVEGNEEFDLGGYRMLIYTPGHARHHMSVLV--DDFLFTGDSAYFNGVVIPTTPPVIDYKMYMESLKRQIEL--KPKVVGFAHGGLVSPKIMEEHLKQMLSKEEIQIN. 232
39 -32.4005iqk_A mol:protein length:271 beta-lactamase Rm3  ali model follow..  16  11........................................NADQAPFRLFGNTYYV--------GMKGLSSVLVTSPQGHVLIDGGL-PESAPKIIANIGAL--EDVKLILNSHGHIDHAGGLAELQRRNALVAASPSAALDLASGEVKYPPVKDMRLARDGGQFNVGPVYLAHATPGHTPGGLSWTWQSCDGPRCLNMVYADSINAVSRPGPNALADLRHSFETLEKL--PCDVLISAHPEASQRAYVAAARTLLDSRLDQEKQQ 271
40 -31.6001ztc_A mol:protein length:221 hypothetical protein TM0894  ali model follow..  16  29....................................................................STVVYLEHKDRRIIIDPGNLSS-MDELEEKFSELGISPITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKPWHAREHLSFLLDTENVLITGDITPNRL-----SYYDIIKGYGSVQVKNFLDRVGRIDLLVFPHDAP....................... 208
41 -30.6004ad9_A mol:protein length:289 BETA-LACTAMASE-LIKE PROTEIN 2  ali model follow..  18  8............................................RVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPE-SCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVL-PGHTDDHMALLLEEENAIFSGDCILGEGTTVF-----EDLYDYMNSLKELLKI--KADIIYPGHGPV-----IHNAEAKIQQYISHRNIR 221
42 -29.0004v0h_A mol:protein length:266 METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROT  ali model follow..  23  68....................................................................AEAALEEAARGPILVDTGGPWAR-EALLGALAGQGVAPVTLVVGTHGHSDHIGNLGLF----------PGAALLVSHDFCLPGGRYLPHGLGEGQPLRLGPGLEVWATPGHGGQRDVSVVVAGTVVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVV---ADVVVPGHGPP....................... 234
43 -28.0002xf4_A mol:protein length:210 HYDROXYACYLGLUTATHIONE HYDROLASE  ali model follow..  17  11..................................................................FSQNCSLIWCEQLAALVDPGGD---AEKIKQEVDAS-GVTLMQILLTHGHLDHVGAASELAQHGVPVIGPEKEDEFWLQG-DECQPLTPDRWLNDGDRVSVGNVTLVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGV-GRSDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQD........ 210
44 -27.8005i0p_A mol:protein length:366 Beta-lactamase domain protein  ali model follow..  18  1......................MAMNALEHQLDYPFADTLPAAGDTFEVAPGVRWLRMPLPFSLDHI--NLWLL-GQAGWTIVDCGISSEAIRTHWEQIRHLDGLPVLRVLVTHCHPDHFGLANWLCEGNVRLWMTLGEYMFGCLMAAGNGSNAGGAALREGDAVKIGARTWVVTGYGHSPEHCALHSEADGVLISGDMVLPRISTNVSVFDLEPLALYLESLGRYETM-APDTLVLPSHGKP--AQLRAHHDARLEEVRVACAEK 303
45 -26.9002r2d_A mol:protein length:276 Zn-dependent hydrolases  ali model follow..  15  41..................................................................IPVSAYLIQCTDATVLYDTGCHPESECNLPERLRQLGLSPISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEERERELAPGVNLLNFGTGHASGMLGLAVRLEKFLLVSDACYTATNYGPPARRAGDTIGYDRTVSHIRQYAESRSLVLFGHDREQFASLIKSTDGFYE......... 276
46 -26.6001xm8_A mol:protein length:254 glyoxalase II  ali model follow..  17  9..................................................................LKDNYAYILDTGTVGVVDPS----EAEPIIDSLKRS-GRNLTYILNTHHHYDHTGGNLELKDRGAKVIGSAMDKDRIPG---------IDMALKDGDKWMFAGHEVHVMDPGHTKGHISLYFPGSRAIFTGDTMFSLS---CGKLFEGTPKQMLASLQKITSL-PDDTSIYCGHEYTLSNSKFALSLE............ 183
47 -26.2001qh3_A mol:protein length:260 PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE)  ali model follow..  17  9..................................................................LTDNYMYLVIDDEAAIVDPV----QPQKVVDAARKH-GVKLTTVLTTHHHWDHAGGNEKLVKLGLKVY------------GGDDRIGALTHKITHLSTLQVGSLNVKCLAPCHTSGHICYFVSKPGAVFTGDTLFVAG---CGKFYEGTADEMCKALLEVLGRLPPDTRVYCGH---------EYTINNLKFARH..... 185
48 -25.0003dha_A mol:protein length:254 N-Acyl Homoserine Lactone Hydrolase  ali model follow..  14  1....................................GRISMTVKKLYFIPAGRSVNSALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNNIVNILKRVGYEPLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIETEQVLLTIDASTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKIIFFGH-DIEQEKSCRVFPEYI.......... 254
49 -24.8002p18_A mol:protein length:311 Glyoxalase II  ali model follow..  16  1...................SSGLVPRGSHMRNYCTKTFGSAFSVTVVPTLKDNFSYLINDH--------------TTHTLAAVDVNADYKPILTYIEE-NADVTYTFSTILSTHKHWDHSGGNAKLKAE-----AMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDPCHTRGHVLYKVQHPQALFTGDTMFIAG---IGAFFEGDEKDMCRAMEKVYHIHDKVTFIFPGH---------EYTSGFMTFSEK..... 232
50 -24.8002br6_A mol:protein length:252 AIIA-LIKE PROTEIN  ali model follow..  13  35..................................................................LPVWCYLLETEEGPILVDTGMPESAVNNIVNILKRVGYEPLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIKTEQVLLTIDASTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKIIFFGH-DIEQEKSCRVFPEYI.......... 252
51 -24.7003aj3_A mol:protein length:274 4-pyridoxolactonase  ali model follow..  16  2.........................................SDTKVYLLDGGSLVFWNRGPGGEVRFPVYSILIEHAEGRFLIDTGYDYEKHQTIPGALGLLGLEPIDVVVNSHFHFDHCGGNKYFP--HAKKICHRSEVPQACNPQPFEHLGYSDLSFSDGDVDLARGVKLIST-PGHSIGHYSLLVEFPRILFTIDAAYTQKSTLCQAAFHIDPVAGVNSMRKVKKLAEDHGALMYSHDM........................ 254
52 -24.1004chl_A mol:protein length:238 PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL  ali model follow..  19  28...........................................................................ESREAVLIDP----ETAPRDAQLIKEL-GLRLLYAVNTHCHADHITGSGLLRSL-------------CQSVISRLSGAQADLHIEDGDSIRFGRFALETRAPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTD-FQQGCAKTLYHSVHEKIFTLPGDCLIYPAHDYHGFTVSTVEEERTLNPRLTLSCEE 205
53 -22.6004fek_A mol:protein length:262 Putative diflavin flavoprotein A 5  ali model follow..  13  2....................................SDSKPRDVQVLPIATNTKVLRARS---ERGTTSNSYVIEG-DKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELQITFVCSLPAAGDLRAAFPDDNLNI--LPMRGKETLDLGKLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFKEDQRYYFNCLMAPHAIHVEAALEKISDL--QVRLYAVGHGPLVRTSLIALTQAYADWSKAQKLE. 256
54 -22.1004ysb_A mol:protein length:233 Metallo-beta-lactamase family protein  ali model follow..  19  22...........................................................................ATRQAVLIDP----EQVDRDLQMVAEL-DLTLTHVFDTHVHADHITASGALRERQATVVGSVNGASCA------------NVQVRHGDEVRVGQLVFVLATPGHTDDSISYLLGDR--VFTGDALLVRGNGRTD-FQNGNASQLYDSLTRVLFTLPDETLVYPGHDYKGTVTSIAEEKRHNPRVAGKSREE 197
55 -22.0004le6_A mol:protein length:324 Organophosphorus hydrolase  ali model follow..  18  1MRLFSLSTALSSAMILVSLPLQAAAPAQQKTQVPGYYRMALGDFEVTALYDGLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQPTLGVVQTNLKASGYQPVDTVLLTHLHPDHACGL--VNADGSPAYPNATVEKMAQQAVAPYAKMNKLKPYKTEGELLPGVSLVASPG--HTPGHTSYLFKSQSLLVWGDILLNHAVPEVVFEFDVDSDQARQSRQRILAEAATDKLWVPGLGHV....................... 303
56 -22.0002gcu_A mol:protein length:245 Putative hydroxyacylglutathione hydrolase 3  ali model follow..  18  26...........................................................................PDKPALLIDP----KTVDRDLKLIDEL-GLKLIYAMNTHVHADHVTGTGLLKTK-------------VKSVISKASGSKADLFLEPGDKVSIGDIYLVRATPGHTAGCVTYVTPQPRMAFTGDAVLIRGCGRTD-FQEGSSDQLYESVHSQIFTLPKDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKDKET 209
57 -21.9004o98_A mol:protein length:337 organophosphorus hydrolase  ali model follow..  17  1MRLFSLSTALSSAMILVSLPLQAAAPAQQKTQVPGYYRMALGDFEVTALYDGLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQPTLGVVQTNLKASGYQPVDTVLLTHLHPDHACGL--VNADGSPAYPNATVEKMARQAVAPYAKMNKLKPYKTEGELLPGVSLVASSG--HTPGHTSYLFKSQSLLVWGDILINHAVPEVVWEFDVDSDQARQSRQRILAEAATDKLWVPGLGHV....................... 303
58 -21.1004xuk_A mol:protein length:291 Putative hydrolase  ali model follow..  16  1..............................KQVAGYYQYQAGDVQITALLDGILKKYYADQEKGVQTSINAFLVNIGKSLILIDSGAASSHLGSVLSNLKASGYQPVDTILLTHLHPDHVCGISYVSNDEASFWLDPKQAAKLPKEKQANYLGTVEKIYQAKQRFKTYKLGDDIQGAGHTPGHFSYELKTESIVFIGDIVHSHTVPETAIEYDIDPKKAVETRLKQFANFAKNGQTIPGIGHTYSAD................... 278
59 -21.1004zo2_A mol:protein length:294 Acylhomoserine lactonase  ali model follow..  18  1..............................DDLSGFKKIKLGELELFILTDGYILKDNFRADHYIDMAINILLVKTKEKLILMDTGMGIERTGFLLKSLQKAGFSAITDIFLSHAHPDHIGGV-FISKIEHDFWINASIKDFNNSALKAHPERLNQIIPALQNILK-PKLKFYDLNPGHTPGLTVTTISSEKLMYVADLIHSDVIPDWGFSGDTDLDIATASRKKFLKQLADTKARAPGLGFT....................... 278
60 -21.0003esh_A mol:protein length:280 Protein similar to metal-dependent hydrolase  ali model follow..  12  5..........................................DISIHYLNGGNTKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGEESHIIADLANYTPKDIDYVLMTHMHFDHAAGLTVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVPGIKMQHSG-GHSFGHTIITIESDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKIPYFIQQQYWFLFYHDENYFAVKYSDDGENIDAY....... 270
61 -20.9001p9e_A mol:protein length:331 Methyl Parathion Hydrolase  ali model follow..  19  18......VAATAAVAPLTLVSTAHAAAPQVRTSAPGYYRMLLGDFEITALSDGTVALAKSFQKAPLETSVTGYLVNTGSKLVLVDTGAAGPTLGRLAANLKAAGYQPVDEIYITHMHPDHVGGLLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMAVKAGKFKPFSGNHGHTPGHTTYVVESQKLALLGDLILVAAVPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIPGIGHI....................... 311
62 -19.7002ohh_A mol:protein length:404 Type A flavoprotein fprA  ali model follow..  13  2..........................................KAAAKRISDGVY-LRNYHGYTLQGTTYNAYLVCGDEGVALIDNGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRREAPIYCTEVAVKGLLKHYPSLREAEF-MTVKTGDVLDLGGKTLTFLET-HWPDSMFTLLDEDGILFSNDALMDAARKFYANLITPLSKLVLKKFDEVKELLERIQMIAPSHGQI....................... 236
63 -19.3004d02_A mol:protein length:479 ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDO  ali model follow..  14  3..............................................IVVKNNIHDFHGTEYKTLRGSSYNSYLIR-EEKNVLIDT-VDHKFSREFVQNLRNEIDADIDYIVINHAEEDHAGALTELMAQDTPIYCTANAIDSINGPEWNF------NVVKTGDTLDIGNLIFVETPMLHWPDSMMTYLTGDAVLFSNDALFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDR 249
64 -19.0002q9u_A mol:protein length:414 A-type flavoprotein  ali model follow..  12  8...........................................VQDQEMIPGVYVRIFHGYHTDEGSSYNSYFID-DECPTVIDS-VKYPFAEEWLSRIAACCPDKIKYVVMNHAEGDHASSLKDHYHKNATFVCTKKCQEHLKILYGMEKATW--LIVDDKYTLKIGKRTLKFIPV-HWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVRKALEVASTV--EIKYILSAHGVSWRGDAMGLAIAEYDRWSKGQHCQ 256
65 -18.7001ycf_A mol:protein length:398 Nitric oxide reductase  ali model follow..  16  2............................................QPVAITDGIYYFHGPAFSTHRGTTYNAYLIV-DDKTALVDT-VYEPFKEELIAKLKQIKDVKLDYLVVNHTESDHAGAFPAIMELDAHVLCTQRAFDSLKAHYSHIDFNY--TIVKTGTSVSLGKRSLTFIEA-HWPDSMFTYVPEEALLLPNDAIMDEAAKYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAK 253
66 -18.4001e5d_A mol:protein length:402 RUBREDOXIN:OXYGEN OXIDOREDUCTASE  ali model follow..  16  1...........................................MQATKIIDGFH-LVGAIDWNSRDFHGNAYLVE-DEKTTLFDT-VKAEYKGELLCGIASVIDKKIDYLVIQHLELDHAGALPALIEAPEKIFTSSLGQKAMESHFHYKDWPV--QVVKHGETLSLGKRTVTFYET-HWPDSMVSWFADEKVLISNDILERAMREYYANIVNPYAPQTLKAIETLVGAGVAPEFICPDHGVI-GADQCTFAVQKYVEYAEQKPTN 253
67 -18.0003tp9_A mol:protein length:474 BETA-LACTAMASE and RHODANESE DOMAIN PROTEIN  ali model follow..  19  15....................................................................AHASYLVGCQEACVID----PARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRGAAICVSDEGPP---EWKSEYVKAYPHRLLKDGDELHFGNVRIVVM-PGHTPEHVSYLLYDGKALFSGDFVFVGRVAGESGSSEALARQMFRSLRKFEAL-PDHVQVLPAHGA........................ 201
68 -17.6002qed_A mol:protein length:258 Hydroxyacylglutathione hydrolase  ali model follow..  15  16..................................................................FQDNYIWVLTNDECVIVDPG----EAAPVLKAIAEH-KWMPEAIFLT----DHVGGVKELLQHQMTVYGPAETQ-----------DKGATHLVGDGDTIRVLGEKFTLFAPGHTLGHVCYFSRP--YLFCGDTLFSGG---CGRLFEGTPSQMYQSLMKINSL-PDDTLICCAHANIKFALSILPHDSFINEYYRKVKE. 197
69 -17.6003r2u_A mol:protein length:466 Metallo-beta-lactamase family protein  ali model follow..  17  30....................................................................SQASYLIGCQKAMIID----PIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKNANIYVSGESDDTLGYKNMPNHTH----FVQHNDDIYVGNIKLKVL-PGHTPESISFLLTDEGGLFSGDFIFVGKAVKVEGSSEIGAKQMFKSIESIKDL-PDYIQIWPGHGSPCGKSLGAIPTSTLGYEKQ..... 236
70 -17.2001vme_A mol:protein length:410 Flavoprotein  ali model follow..  15  12...........................................TERIFDDPEIY-VLRIDDDRIRYFEANAYLVKLNGANVLIDG-WKGNYAKEFIDALSKIVDKEITHIIVNHTEPDHSGSLPATLKTDVEIIASNFGKRLLEGFYGIKDVT----VVKDGEEREIGGKKFKFVMT-HWPDTMVTYL--DGILFSCDVGLPHVTKYIVTVIGHYKNYILEGAEKLSSL--KIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKG 260
71 -15.9003kl7_A mol:protein length:235 Putative metal-dependent hydrolase  ali model follow..  1......................................MGSDKIENLYFQGDSFKTKSGKELTITFIKHGSLMLTYDNHSIQVDPVSEYADYTTF---------PKADIILITHEHGDHLDAIQAVEKSDTEIIANENSQKKLGKGK---------VLKNGDTDTSISYMKIEAVPAYNTTPGYILTFDGLRVYIAGDTEDIPEMKDLKDIDIAFLMTVSQAAKAARMFSP--KILYPYHYGDTKIGELKDALK............ 217
72 -15.3004ysk_A mol:protein length:294 Beta-lactamase domain protein  ali model follow..  13  28...........................................................................ETRQCALIDSRTCSASADRLVERVNEL-NASVRWVLETHVHADHLSAAAYLKEKGAHITQVQKVFGALFNAEPGFARSQFDVLLEDEEGFRIGNLQARAL-PGHTPACMSFMIEDEIAVFVGDTLFMPDYGTA-DFPGADARTLYRSIRRLLAF-PDQTRLFMCHDYLPGGRDMQYVTTVAEQRASNI... 235
73 -15.2003g1p_A mol:protein length:258 Protein phnP  ali model follow..  12  41......................................................................SGVVKFNDAITLIDAGLHDLADRWSPGSFQQ--------FLLTHYHMDHVQGLFPLRGDPIPVYGPPDEQGCDDL--KHPGLLDFSHTVEPFVVFDLQGLQVTPLPLNHSKLTFGYLLETA----HSRVAWLSDTAGLPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVQVIRSPRVILTHISHQFDAW 230
74 -15.2004nur_A mol:protein length:633 PSdsA  ali model follow..  18  89.............................................LFEVTDGIYQVRNYD-------LSNMTIVEGKDGITIFDPLISQETAKAALDLYYKHRPKPVVAVIYTHSHVDHYGGVADVKAGKVKIYAPLGFLEHAVAEGTVTLIPPTDIIKETGETHVIDGLTYEFAPGSEAPAEMLYYIKEKKALNAAEDSTHTNTYSLRGAKIRDPLAWSKYLNEALKLWGDDVQVMPVWGNKEVREQLSLQRDMYRYINDET... 354
75 -15.0004efz_A mol:protein length:298 Metallo-beta-lactamase family protein  ali model follow..  15  26...........................................................................GSGECALIDSRTRTASADQLIARVAAL-GARVRWLLETHVHADHLSAAPYLKTRGRHVTRVQDVFGKLFNAGPAFAHSQFDRLLDDGDTLALGALSIRAM-PGHTPACMTYVVTEDAAAFVGDTLFMPDYGTA-DFPGGDARSLYRSIRKVLSL-PPATRLYMCHDYQPNGRAIQYASTVADELRENV... 239

FFAS is supported by the NIH grant R01-GM087218-01
1 0 8 9 4 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.