current user: public

anford Burnham Prebys Medical Discovery Institute
We are hiring bioinformatics experts and software developers. Join us!

Query: 4v0h_A mol:protein length:266 METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROT, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .
# Score Template Links and tools%idFirst MRTEPLCGASPLLVPGDPYSVVVLLQGYAEPEGVGDAVRADGSVTLVLPQTRGPASSHRESPRGSGGAEAALEEAARGPILVDTGGPWAREALLGALAGQGVAPGDVTLVVGTHGHSDHIGNLGLFPGAALLVSHDFCLPGGRYLPHGLGEGQPLRLGPGLEVWATPGHGGQRDVSVVVAGTALGTVVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVVADVVVPGHGPPFRVLREASQPETEGGGNSQQEPVVGDEEPALHLast
1 -97.3004v0h_A mol:protein length:266 METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROT  ali model  100  1MRTEPLCGASPLLVPGDPYSVVVLLQGYAEPEGVGDAVRADGSVTLVLPQTRGPASSHRESPRGSGGAEAALEEAARGPILVDTGGPWAREALLGALAGQGVAPGDVTLVVGTHGHSDHIGNLGLFPGAALLVSHDFCLPGGRYLPHGLGEGQPLRLGPGLEVWATPGHGGQRDVSVVVAGTALGTVVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVVADVVVPGHGPPFRVLREASQPETEGGGNSQQEPVVGDEEPALH 266
2 -55.8001ztc_A mol:protein length:221 hypothetical protein TM0894  ali model follow..  18  3..............SDKIMELKILVTGGNVFV---------------------------PGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNSSWKNVVLLKGEESLFDEKVKVFHTPWHAREHLSFLLDT-ENAGRVLITGDITPNRLSYYDIIK-GYGSVQVKNFLDRVGR-IDLLVFPHDAPLK.............................. 210
3 -50.6002br6_A mol:protein length:252 AIIA-LIKE PROTEIN  ali model follow..  18  1.............MDMTVKKLYFIPAGRCMLDHSSVNSALT------------------PGKLLNLPVWCYLLETEEGPILVDTGMPESEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIKT-EQSGSVLLTIDASYTKENFEDEVPAGFDPELALSSIKRLKEVVKIIFFGHDI................................. 239
4 -50.6003aj3_A mol:protein length:274 4-pyridoxolactonase  ali model follow..  20  1...............MSDTKVYLLDGGSLVLDGYHVFWNRG------------------PGGEVRFPVYSILIEHAEGRFLIDTGYDYDHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGNKYFPHAKKICHRSEVPQACNPQPFEHLGDGDVDLARGVKLISTPGHSIGHYSLLVEF-PRRKPILFTIDAAYTQKSLECQAAFHIDPVAGVNSMRKVKKLAEELMYSHDM................................. 254
5 -50.5003dha_A mol:protein length:254 N-Acyl Homoserine Lactone Hydrolase  ali model follow..  18  2............RISMTVKKLYFIPAGRCMLDHSSVNSALT------------------PGKLLNLPVWCYLLETEEGPILVDTGMPESEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIET-EQSGSVLLTIDASYTKENFEDEVPAGFDPELALSSIKRLKEVVKIIFFGHDI................................. 241
6 -49.8004zo2_A mol:protein length:294 Acylhomoserine lactonase  ali model follow..  19  2......DLSGFKKIKLGELELFILTDGYIHEENLISFAPRGNVAELKT----ILKDNFRADHYIDMAINILLVKTKEKLILMDTGMGIRTGFLLKSLQKAGFSAHDITDIFLSHAHPDHIGGVLVFPNASIFISKIEHDFWKAIQPKLKFYDLNKTLYSHFNFQLAPGHTPGLTVTTISSGNEK--LMYVADLIHSDPHPDWGFSGDTDLDIATASRKKFLKQLARAFTSHLP--FTKVKAPGFEWIPESFM.............. 293
7 -49.3002r2d_A mol:protein length:276 Zn-dependent hydrolases  ali model follow..  20  2.................GNKLFVLDLG---------EIRVDENFIIANSTFVTPQKPTVSSRLIDIPVSAYLIQCTDATVLYDTGCHPEECNLPERLRQLGLSPDDISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVRYFATGDRDERERELAPGVNLLFGTGHASGMLGLAVRL-EKQPGFLLVSDACYTATNYGRRAGVLHDTIGYDRTVSHIRQYAETVLFGHDR................................. 261
8 -48.6004le6_A mol:protein length:324 Organophosphorus hydrolase  ali model follow..  19  29..QQKTQVPGYYRMALGDFEVTALYDGYVDLPAS-------KGIDDKDLQSLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQTLGVVQTNLKASGYQPEQVDTVLLTHLHPDHACGLPAYPNATVEVPQAEAEFWLDEATMAKAPETEGELLPGVSLVASPGHTPGHTSYLFKSGGQS--LLVWGDILLNHAKPEVVFEFDVDSDQARQSRQRILAEAAWVAGAHLP--HVRKEAQGYAWVPVEFSPIRS.......... 322
9 -48.5001p9e_A mol:protein length:331 Methyl Parathion Hydrolase  ali model follow..  17  39..QVRTSAPGYYRMLLGDFEITALSDGTVALPVDKRLNQPAPKTQSALAKSFQK-------APLETSVTGYLVNTGSKLVLVDTGAAGTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLLAFPNAVVRADQKEADFWLSQTNLDKAPDDNTDLVPGIKALASHGHTPGHTTYVVESQGQK--LALLGDLILVAADPSVTTQLDSDSKSVAVERKKAFADAALIAASHLS--HIRAEGKGYRFVPVNYSVVNP.......... 330
10 -48.5004o98_A mol:protein length:337 organophosphorus hydrolase  ali model follow..  18  29..QQKTQVPGYYRMALGDFEVTALYDGYVDLPAS---LLKGIDDKDLQS--LLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQTLGVVQTNLKASGYQPEQVDTVLLTHLHPDHACGLPAYPNATVEVPQAEAEFWLDEATMAKAPETEGELLPGVSLVASSGHTPGHTSYLFKSGGQS--LLVWGDILINHAKPEVVWEFDVDSDQARQSRQRILAEAAWVAGAHLP--HVREEAQGYAWVPVEFS.............. 318
11 -48.3004xuk_A mol:protein length:291 Putative hydrolase  ali model follow..  16  2......QVAGYYQYQAGDVQITALLDGTNFMSPN-------KDIPQQQVHEILKKYYADQEKGVQTSINAFLVNIGKSLILIDSGAASHLGSVLSNLKASGYQPEQVDTILLTHLHPDHVCGIANFPNATVYVSNDEASFWLDQAKQRFKTYKLGDDIQGFKVINTAGHTPGHFSYELKTKGES--IVFIGDIVHSHDRPETAIEYDIDPKKAVETRLKQFANFATIAAPHLPFPGIGH........................... 273
12 -48.2003esh_A mol:protein length:280 Protein similar to metal-dependent hydrolase  ali model follow..  16  1.............MKIGDISIHYLNGGNTKMD-------GGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKSHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLAIFENAIHVVQQDEWHEFIAPNIRSKSTEKHFEPVPGIKMQHSGGHSFGHTIITIESQGDK--AVHMGDIFPTTANPLWVTAYDDYPMQSIREKERMIPYFIWFLFYHDENYFAVK........................... 259
13 -38.9001sml_A mol:protein length:269 PROTEIN (PENICILLINASE)  ali model follow..  18  38...................................................................LTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRAKVAANAESAVLLARGGSDDVMDGEVITVGGVFTAHFMAGHTPGSTAWTWTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALCDVLLTPHPGASNWDYAAGARAGAK.................. 242
14 -37.6003lvz_A mol:protein length:294 Blr6230 protein  ali model follow..  19  55...................................................................IAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKAQLVAGERDKPLLEGKVDRAVKEGDRVTLGDTLTAHATPGHSPGCTSWEVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAMIDVLLGPHPEVYGMQAKRAE....................... 254
15 -36.6001jt1_A mol:protein length:263 FEZ-1, class B3 metallo-beta-lactamase  ali model follow..  17  25...................................................................LASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQAKYMVMDEDVSVILSGGKSDLHDGERVELGGVLTAHLTPGHTRGCTTWTLKDHGKQYQAVIIGSIVNPGYKLVDNITYPKIAEDYKHSIKVLESMCDIFLGSHAGMFDLKNKYVL....................... 227
16 -36.5004p62_A mol:protein length:295 Metallo-beta-lactamase AIM-1  ali model follow..  24  58...................................................................ISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVLSHEHFDHAGSLAELQKAPVYARAPAIDTLKRGLPDRLADDGVVSVGPALTAVASPGHTPGGTSWTWSCEGDDCRQMVYADSLTAISDDVYRAAHPGYLAAFRNTLARVAALCDILVTPHPSASGLWNRIGPRAAAP.................. 267
17 -36.3004awy_B mol:protein length:303 METALLO-BETA-LACTAMASE AIM-1  ali model follow..  23  58...................................................................ISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVRAIVFSHEHFDHAGSLAELQKAPVYARAPAIDTLKRANIVTLADDGVVSVGPALTAVASPGHTPGGTSWTWSCEGDDCRQMVYADSLTAISDDVFRAAHPGYLAAFRNTLARVAALCDILVTPHPSASGLWNRIGPRAAAP.................. 267
18 -36.1003vpe_A mol:protein length:262 Metallo-beta-lactamase  ali model follow..  21  26...................................................................ISAVLLSSPQGHILVDGTTEKGAQVVAANIRAMGFKLSDVKYILSTHSHEDHAGGISAMQKATVLAGAANVDTLRTAKVRAVADGELVKLGPAVKAHATPGHTEGGITWTSCEQGKCKDVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKLCDIAIAAHPEVNDMWTRQQR....................... 227
19 -35.9002q0j_A mol:protein length:321 Quinolone signal response protein  ali model follow..  23  36...................................................................VPVFLLRLGEASALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLPNVQVLASERTCQAWKSESARAVADGEWLELGPRLQVIEAHGHSDDHVVFY----DVRRRRLFCGDALFDEAEGVWRPLVFDDMEAYLESLERLQRLPTQLIPGHGGLLR.............................. 240
20 -35.3005iqk_A mol:protein length:271 beta-lactamase Rm3  ali model follow..  21  31...................................................................LSSVLVTSPQGHVLIDGGLPESAPKIIANIGALGFRIEDVKLILNSHGHIDHAGGLAELQRALVAASPSAALDLASKDMRLARDGGQFNVGPYLTAHATPGHTPGGLSWTSCDGPRCLNMVYADSISRPGFKFSASSEYPNALADLRHSFETLEKLCDVLISAHPEASQLWQRLEA....................... 235
21 -35.3005aeb_A mol:protein length:272 LRA-12  ali model follow..  15  38...................................................................LACYLITTKQGNIIVNTGLAASALQIKNNIKALGFKLTDTKILLTTQAHYDHLGAMAEIKKAKLMADEGDATVMADIADRLLHDKDTIQLGDKLVMLHHPGHTKGSCSFLFDTEQRSYRILIANMPIVIEKKFSEVSSYPGIAKDYAYTLQAMKNLFDIWVASHASQFSMHSKHKP....................... 239
22 -30.7003adr_A mol:protein length:261 Putative uncharacterized protein ST1585  ali model follow..  20  20...................................................................ATVYVMCGEKLTVMIDAGVSNSIADF--------SFLDKLDYIVLTHLHIDHIGLLPELYKAKVLVKSGFKKY-DQDKVIEVEGNEEFDLGGRMRLIYTPGHARHHMSVLVDD------FLFTGDSAYFNGVVIPTTPPVIDYKMYMESLKRQIELPKVVGFAHGGLVS.............................. 212
23 -29.2002p97_A mol:protein length:201 Hypothetical protein  ali model follow..  15  22.................................................................IDFNGFAWIRPEGNILIDP--VALSNHDWKHLESLG----GVVWIVLTNS--DHVRSAKEIAYTKIAGPVAEKENFPIYCDRWLSDGD--ELVPGLKVMELQGKTPGELALLLEET-----TLITGDLVRAYRAGGLPDEKLMNKQKVVASVRRLAALEKAVLVGDGWSVFRDGR.......................... 190
24 -29.2005a87_A mol:protein length:248 METALLO-BETA-LACTAMASE VIM-5  ali model follow..  22  51...................................................................SNGLIVRDGDELLLIDTAWGAKNAALLAEIEKQIGLP--VTRAVSTHFHDDRVGGVDVLRGVATYASPSTRRLAEAEGNEIPTHSLEGLSSSGDAVYPGAAHSTDNLVVYVPSAN----VLYGGCAVLALSRTSAGNVADADLAEWPTSVERIQKHAEVVIPGHGLP................................ 225
25 -29.0004uwo_B mol:protein length:266 METALLO-BETA-LACTAMASE VIM-26  ali model follow..  23  69...................................................................SNGLIVRDGDELLLIDTAWGAKNAALLAEIEKQIGLP--VTRAVSTHFHDDRVGGVDVLPSTRRLAEAEGNEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSAN----VLYGGCAVLELSSTSAGNVADADLAEWPTSVERIQKHAEVVIPGHGLP................................ 243
26 -28.8002zwr_A mol:protein length:207 Metallo-beta-lactamase superfamily protein  ali model follow..  25  11.................................................................LQENAYLVETGEGPVLIDPG--DEPEKLLALFQTTGLIPLAI---LLTHAHFDHVGAVAPLVDLPVYLHPLDLPLYEGADLAARAWGEEGMRLFGFQVLHLPGHSPGHVAFY----DPEGAQVFSGDLLFRGSVGRYDLP---DPKALFASLKRLLSLPPRVHPGHGPGTTLGLEART....................... 196
27 -28.6002yz3_A mol:protein length:266 Metallo-beta-lactamase  ali model follow..  22  69...................................................................SNGLIVRDGDELLLIDTAWGAKNAALLAEIEKQIGLP--VTRAVSTHFHDDRVGGVDVLRGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVYPGAAHSTDNLVVYVPSAS----VLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHAQFVIPGHGLP................................ 243
28 -28.4002y87_A mol:protein length:265 METALLO-B-LACTAMASE  ali model follow..  22  68...................................................................SNGLIVRDADELLLIDTAWGAKNVALLAEIEK--QIGLPVTRSISTHFHDDRVGGVDVLRGVATYTSPLTRQLAEAAGNEVPAHSLKALSSSGDVVYPGAAHSGDNLVVYVPAVR----VLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRAEVVIPGHGLP................................ 242
29 -28.3005a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1  ali model follow..  15  1....................MGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQAQILNWIKQEINLP--VALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAAPLKVFYPPGHTSDNITVGIDGTD----IAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAASMIVMSHSAP................................ 226
30 -28.2002nze_A mol:protein length:222 Beta-lactamase II  ali model follow..  19  36...................................................................SNGLVLNTSKGLVLVDSSWDDKLKELIEMVEK--KFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFYPGKGHTEDNIVVWLPQYN----ILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRINAVVPGHGEV................................ 208
31 -28.1004gyq_A mol:protein length:243 Beta-lactamase NDM-1  ali model follow..  14  1....................SNAIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQAQILNWIKQ--EINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAAPLKVFYPPGHTSDNITVGIDGTD----IAFGGCLIKDSKAKSLGNLGAADTEHYAASARAFGAAASMIVMSHSAP................................ 226
32 -27.9004rl2_A mol:protein length:246 Beta-lactamase NDM-1  ali model follow..  15  2..................SHMGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQAQILNWIKQEINLP--VALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAAPLKVFYPPGHTSDNITVGIDGTD----IAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAASMIVMSHSAP................................ 229
33 -27.8004wd6_A mol:protein length:233 Metallo-beta-lactamase  ali model follow..  17  5.......................................PELRIEKVKENIFLHTSYSRVNGFGLVSSNGLVVIDKGNAFIVDTPWSDRDETLVHWIRKNG---YELLGSVSTHWHEDRTAGIKWLNDQSISTTNHLLKENKKEPAKYTLKGNESTLVDGIEVFYPGGHTIDNVVVWLPKSK----ILFGGCFVRSLDSEGLGYTGEAHIDQWSRSAQNALSRAQIVIPGHGK................................. 202
34 -27.5002uyx_A mol:protein length:228 BETA-LACTAMASE II  ali model follow..  15  1..ASQKVEKTVIKNETGTISISQLNKNVWVHTELGSF------------------------NGEAVPSNGLVLNTSKGLVLVDSSWDDKLKELIEMVEK--KFQKRVTDVIITHAHASRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFYPGKGHTEDNIVVWLPQYN----ILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRINAVVPGHGEV................................ 214
35 -27.5002ynt_B mol:protein length:233 GIM-1 PROTEIN  ali model follow..  17  5.......................................KPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLL--LSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTTKKLLAREGKPVPTHYFKDDEFTLGNGIELYYPAGHTEDNIVAWLPKSK----ILFGGCLVRSHEWEALGYVGDASISSWADSIKNIVSKIQMVVPGHGK................................. 202
36 -27.5003fcz_A mol:protein length:222 Beta-lactamase 2  ali model follow..  16  36...................................................................SSGLVLNTSKGLVLVDSSWDDKLKELIEMVEK--KFQKRVTDAIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFYPGKGHTEDNIVVWLPQYN----ILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVSKRINAVVPSHGEV................................ 208
37 -27.3003rkk_A mol:protein length:237 Beta-lactamase NDM-1  ali model follow..  16  1..........................SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQAQILNWIKQEINLP--VALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAAPLKVFYPPGHTSDNITVGIDGTD----IAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAASMIVMSHSAP................................ 220
38 -27.3003spu_A mol:protein length:265 Beta-lactamase NDM-1  ali model follow..  14  2....................PGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQAQILNWIKQ--EINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAAPLKVFYPPGHTSDNITVGIDGTD----IAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAASMIVMSHSAP................................ 227
39 -27.3004tyf_A mol:protein length:231 NDM-4  ali model follow..  16  1................................GPGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQAQILNWIKQEINLP--VALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGLVAAQHSLTFAAPLKVFYPPGHTSDNITVGIDGTD----IAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAASMIVMSHSAP................................ 214
40 -27.3004f6h_A mol:protein length:236 Beta-lactamase  ali model follow..  16  5.......................................PDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDEKLVTWFVERG---YKIKGSISSHFHSDSTGGIEWLNSRSIPTTNELLKKDGKVQATNSFSGVNYWLVKNIEVFYPPGHTPDNVVVWLPERK----ILFGGGFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEV................................ 200
41 -27.0004exs_B mol:protein length:272 Beta-lactamase NDM-1  ali model follow..  14  21.............LMLSGCMPGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQAQILNWIKQ--EINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAAPLKVFYPPGHTSDNITVGIDGTD----IAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAASMIVMSHSAP................................ 253
42 -26.9002zo4_A mol:protein length:317 Metallo-beta-lactamase family protein  ali model follow..  26  22...................................................................VNLYLLQGAGEVALVDTALGTRRGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGARVFLHEEEFARGHRFWREPLRDGEALEVAGRLRVLWTPGHADGHAAFYLEEEG----VLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSLDRLADLAYAGHFGPIA.............................. 238
43 -26.9005acp_A mol:protein length:250 GIM-1 PROTEIN  ali model follow..  16  22.......................................KPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLL--LSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTTKKLLAREGKPVPTHYFKDDEFTLGNGIELYYPAGHTEDNIVAWLPKSK----ILFGGCLVRSHEREGLGYVGDASISSWADSIKNIVSKIQMVVPGHGKV................................ 220
44 -26.5001znb_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  18  1...............................AQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQETLVNWVAD--SLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSMTIDLAKEKGLPVPEHGFTDSLTVSLDLQCYYLGGHATDNIVVWLPTEN----ILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKARYVVPGHGDY................................ 209
45 -26.5003l6n_A mol:protein length:219 metallo-beta-lactamase  ali model follow..  14  31...................................................................ANSMYLVTKKGVVLFDVPWEKVQQSLMDTIKK--RHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGKATSTEIIKTGKPYRIFLGEGHTADNVVVWFPKYN----VLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKATLIIPGHDEW................................ 203
46 -26.5001a7t_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  18  1...............................AQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQEMLVNWVTD--SLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSMTIDLAKEKGLPVPEHGFTDSLTVSLDLQCYYLGGHATDNIVVWLPTEN----ILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKARYVVPGHGNY................................ 209
47 -26.3004ubq_A mol:protein length:229 Beta-lactamase  ali model follow..  16  6.......................................PDLKIEKLEEGVYVHTSFEEVNGWGVVSKHGLVVLVNTDAYLIDTPFTATDEKLVNWFVERG---YKIKGTISSHFHSDSTGGIEWLNSQSIPTTNELLKKDGKVQAKNSFSGVSYWLVKNIEVFYPPGHTQDNVVVWLPEKK----ILFGGCFVKPDGLGNLGDANLEAWPKSAKILMSKYVKAKLVVSSHSEI................................ 201
48 -25.7004ad9_A mol:protein length:289 BETA-LACTAMASE-LIKE PROTEIN 2  ali model follow..  22  32...................................................................TNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKSI---PQREEIIGNGEQQYVYLKDGDVIKTEGLRVLYTPGHTDDHMALLLEEEN----AIFSGDCI-----LGEGTTVFEDLYDYMNSLKELLKIADIIYPGHGPVIH.............................. 205
49 -25.6001m2x_A mol:protein length:223 class B carbapenemase BlaB-1  ali model follow..  17  27...................................................................ANAVYLVTDKGVVVIDCPWGEDKKSFTDEIYK--KHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTMTDSILAKENKPRAQYTFDNNKSFKVGFQVYYPKGHTADNVVVWFPKEK----VLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKAQYVVAGHDDW................................ 199
50 -24.5001x8h_A mol:protein length:228 Beta-lactamase  ali model follow..  15  23...................................................................ENSMVYFGAKGVTVVGATWTPDARELHKLIKRVSRKP--VLEVINTNYHTDRAGGNAYWKGAKVVSTRQTRDLMKSDWAENVVHDGDFTLQEGVRAFYAPAHTPDGIFVYFPDEQ----VLYGGCILKE----KLGNLSFADVKAYPQTLERLKAMIKTVIGGHDSPL............................... 208
51 -24.3003q6v_A mol:protein length:233 Beta-lactamase  ali model follow..  11  26...................................................................ENSMVYIGTDGITIIGATWTPETETLYKEIRKVSPLP--INEVINTNYHTDRAGGNAYWKGAKIVATQMTYDLQKSQWGSDTVFPGDFNLQNGIRAMYLEAHTKDGIFVYFPAER----VLYGNCILKE----NLGNMSFANRTEYPKTLEKLKGLVDSIIAGHDTPI............................... 215
52 -23.7004bp0_A mol:protein length:250 METALLO-B-LACTAMASE  ali model follow..  17  38......................................................................VAKMLDGTVVIVSSPFENLGQTLMDWVAK--TMKPKKVVAINTHFHLDGTGGNEIYKGAETWSSDLTKQLRLEENKKDRIKKQGKVFSFSVEVSFPPAHSPDNVVVYFPKKK----LLFGGCMIKPKELGYLGDA---NVKAWPDSARRLKKFAKIVIPGHGEW................................ 228
53 -23.6002xf4_A mol:protein length:210 HYDROXYACYLGLUTATHIONE HYDROLASE  ali model follow..  23  9.............................................................TAFSQNCSLIWCEQTRLAALVDPG--GDAEKIKQEVDASGVT---LMQILLTHGHLDHVGAASELAGVPVIGPEKEDEFWLQGLPAQLNDGDRVSVGNTLQVLHCPGHTPGHVVFF----DEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGDTFIPGHGPLSTLGYERLH....................... 204
54 -21.5001qh3_A mol:protein length:260 PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE)  ali model follow..  20  13....................................................................YMYLVIDDKEAAIVDPV---QPQKVVDAARKHGV---KLTTVLTTHHHWDHAGGNKLESGLKVYGGDDRI----GALTHKITHLSTLQVGSNVKCLATPCHTSGHICYFVSKPGGSEPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHE.................................. 174
55 -21.3002gcu_A mol:protein length:245 Putative hydroxyacylglutathione hydrolase 3  ali model follow..  19  13.................................................................SSTFTYLLHPDKPALLIDP-VDKTVDRDLKLIDELGLK---LIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGSKADLFLEPGDKVSIGDYLEVRATPGHTAGCVTYVTGEGADQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTLPKLIYPAHD.................................. 184
56 -21.0004chl_A mol:protein length:238 PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL  ali model follow..  18  17.................................................................SCTFTYLLRESREAVLIDP-VLETAPRDAQLIKELGLR---LLYAVNTHCHADHITGSGLLRSLLPGCQSVISRLSGAQADLHIEDGDSIRFGRALETRASPGHTPGCVTFVLNDHS----MAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTLPGLIYPAHD.................................. 180
57 -20.7001xm8_A mol:protein length:254 glyoxalase II  ali model follow..  17  13....................................................................YAYILHDEGTVGVVDPS---EAEPIIDSLKRSGRN---LTYILNTHHHYDHTGGNLELKDRY-VIGSAMDKDRIPGIDMALKDGDKWMFAGEVHVMDTPGHTKGHISLYFPGSR----AIFTGDTMFS---LSCGKLFEGTPKQMLASLQKITSLPDSIYCGHE.................................. 170
58 -20.2004ysb_A mol:protein length:233 Metallo-beta-lactamase family protein  ali model follow..  23  11.................................................................SSTYTYLIEATRQAVLIDP-VLEQVDRDLQMVAELDLT---LTHVFDTHVHADHITASGALREATVVGSVNG----ASCANVQVRHGDEVRVGQVFQVLATPGHTDDSISYLL------GDRVFTGDALLVRGNGRTDFQNGNASQLYDSLTRVLFTLPDLVYPGHD.................................. 171
59 -19.2002p4z_A mol:protein length:284 Metal-dependent hydrolases of the beta-lactam  ali model follow..  21  29.....................................................................SLLLKKGNKEIVVDTGQS---ENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLPEVKIYTHKEILNK-EKYKNNFVLIDKDAEIEEGFYVITIPDKFLDEVFVVVK--EEDGINVVTGNILETARNRFGVSYIGMEEEKVKDIARKIEEYVKKVLTGH................................... 249
60 -19.1002p18_A mol:protein length:311 Glyoxalase II  ali model follow..  17  35....................................................................FSYLIHTTHTLAAVDV--NADYKPILTYIEEHLKQQGTFSTILSTHKHWDHSGGNAKLKAEVVVGGAND-----PAVTKPVREGDRVQVGDSVEVIDAPCHTRGHVLYKVQHPQHPNDALFTGDTMFIAG----GAFFEGDEKDMCRAMEKVYHIHTFIFPGHE.................................. 221
61 -18.8004fek_A mol:protein length:262 Putative diflavin flavoprotein A 5  ali model follow..  16  41.................................................................TTSNSYVIE-GDKTAIIDPPVESFMKIYLEALQQT-VNLKKLDYVILGHFSPNRIPTFKLAPQITFVCSLPAAGDLRAAFPDDMRGKETLDLGKGLKFLPIP-RWPAGLCTYDVQTQ----ILYTDKIFGAHICGDDVFDDNWESIHVEAALEKISDLVRLYAVGHGPLVR.............................. 236
62 -18.6005i0p_A mol:protein length:366 Beta-lactamase domain protein  ali model follow..  21  45...................................................................INLWLLRDQAGWTIVDCGISSEAIRHWEQIFDRHLDGLPVLRVLVTHCHPDHFGLANWLCEVRLWMTLGEYMFGCLMAAGNLREGDAVKIGATWRVVTGYGHSPEHCALH----SEADGVLISGDMVLPRISTNVSEPEANPLALYLESLGRYETMAPLVLPSHGKPFR.............................. 276
63 -18.1003tp9_A mol:protein length:474 BETA-LACTAMASE and RHODANESE DOMAIN PROTEIN  ali model follow..  21  14.................................................................LAHASYLVQETGEACVIDP---RDVEPYLLTAKREGLR---IVAALETHIHADFVSGAREMAGAAICVSDEKSEYVKAYPHRLLKDGDELHFGN-IVVMHTPGHTPEHVSYLLYDGKTSGDFVFVGDVGRPDLLERVAGESGSSEALARRSLRKFEALPDQVLPAHGAGSACGKALGAVPSSTVGYE.............. 220
64 -17.4002ycb_A mol:protein length:636 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT  ali model follow..  11  134LRTPPISSE----------IIERIRRTLRKNSKERKKILQQLGNRIHQKPKYDNDWARLTGGFREVGRSCLYLQTPNSRVLLDCGVGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLREDEPLPFNVKHVKKSVKHTITLDYGEVTDIAPDIRLLHNAGHILGSAMAHLHIGDGQHNMVYTGD-------------FKYEQSRLLEAAANRFPRIETLV...................................... 375
65 -17.2003r2u_A mol:protein length:466 Metallo-beta-lactamase family protein  ali model follow..  18  29.................................................................LSQASYLIQKTGEAMIIDP---RDLSSYIRVADEEGLT---ITHAAETHIHADFASGIRDVANANIYVSGESDDTLGPNHTHFVQHNDDIYVGNKLKVLHTPGHTPESISFLLTDEGASGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKKSIESIKDLPDQIWPGHGAGSPCGKSLGAIPTSTLGYE.............. 234
66 -17.0002ohh_A mol:protein length:404 Type A flavoprotein fprA  ali model follow..  18  33.................................................................TTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDAQVGMERVDYIIQNHVEKDHSGVLVRFPEAPIYCTEVHYPSLREAEFMTVKTGDVLDLGGTLTFLETP-HWPDSMFTLLDEDG----ILFSNDAFGQHLCCPQRLDREIPEYILMDAARKLLERIQMIAPSHGQIWT.............................. 238
67 -16.9001zkp_A mol:protein length:268 hypothetical protein BA1088  ali model follow..  18  36..................................................................ATSGYLFEHDGFRLLVDCGSG-----VLAQLQKY-ITPSDIDAVVLSHYHHDHVADIGVLQYARLITSAHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGND--IVVYSADS------------------SYIPEFIPFTKDADLFIAGHMNSTEVASIAKDANVKELLLTHLPH.......... 232
68 -16.8004d02_A mol:protein length:479 ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDO  ali model follow..  16  33.................................................................SSYNSYLIR-EEKNVLIDTVDHKFSREFVQNLRNE-IDLADIDYIVINHAEEDHAGALTQIPDTPIYCTANAIDSINGPEWNFNVVKTGDTLDIGLIFVETP-HWPDSMMTYLTGDA----VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANVDMIATSHGVVWR.............................. 228
69 -16.7002xr1_A mol:protein length:640 CLEAVAGE AND POLYADENYLATION SPECIFICITY FACT  ali model follow..  13  138VRTPPIKSR----------TVKNIREFMRNNLKERKEILKTVGRKIHRECTSKDQWVRVTGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLFHNAGHILGSAISHFHIGDGLHNVVFTGDY-------------KYEKTRLFDPAVNKFPRVETVI...................................... 378
70 -16.6003af5_A mol:protein length:651 Putative uncharacterized protein PH1404  ali model follow..  14  143VRTPPLQSQ----------TIYSIRQILQTESKDRRKFLRQVGRNIYRKPEYKSRWIRITGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYK-FQYVLREGLLDAIIITHAHLDHCGMLPYLSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLLHNAGHILGSAIVHLHIGNGLHNIAITGD-------------FKFIPTRLLEPANAKFPRLETLV...................................... 390
71 -16.5003rpc_A mol:protein length:264 possible metal-dependent hydrolase  ali model follow..  16  13....................................................................ATGKLTIKNTTFLIDPFLAPKDTGFEGTFNYQQRMPSNVTAVVVTHTHLDHWDDTAI-SLPIFVQNTADKELITSQGFIDVRIIFESLEFNGITLRKTGGHGTGDAMGVIFEAADEPTVYLVGDTVWTSDVEKALLRFDPNVIIMNTGYAQILGFEDSIIMGTKDIGRMVVRKPEAKIIAV................. 225
72 -16.4001vme_A mol:protein length:410 Flavoprotein  ali model follow..  16  44.................................................................ISYNAYLVKLNGANVLIDGWKGNYAKEFIDALSKI-VDPKEITHIIVNHTEPDHSGSLPATHDVEIIASNFGKRLLEGFYGTVVKDGEEREIGGKFKFVMTP-HWPDTMVTYLDG------ILFSCDVGGGYLLPEILDDSNESVVEILEGAEKLSSLIKALLPGHGLIWK.............................. 239
73 -16.3002qed_A mol:protein length:258 Hydroxyacylglutathione hydrolase  ali model follow..  20  23......................................................................VLTNDEGRCVIVDPG---EAAPVLKAIAEHKWM---PEAIFLT----DHVGGVQHFPQMTVYGPAETQDKG---ATHLVGDGDTIRVLGKFTLFATPGHTLGHVCYFSRP------YLFCGDTLFSGG----GRLFEGTPSQMYQSLMKINSLPDLICCAHE.................................. 169
74 -15.6003h3e_A mol:protein length:267 uncharacterized protein Tm1679  ali model follow..  20  32.............................................................................DSVLFDTGKS---DVFLKNARKLGI--DLPKDVLISHGHYDHAGGLLYLSGKRVWLRKEDWNEVLYYNTGKFVIERITEIGKNMFLLGRKDLFEDEQTLVVR--TKEGLVVITGNILLDIAETFNERILKSSDDEIEKIVKAFNELVETVVPCH................................... 230
75 -15.5003kl7_A mol:protein length:235 Putative metal-dependent hydrolase  ali model follow..  12  32....................................................................GSLMLTYDNHSIQVDPVSEYADYT----------TFPKADIILITHEHGDHLDPKAI-SDTEIIANENSQKKLGK--GKVLKNGDTDTSISYMKIEAVPANTTPGRDKYHPRHRDNGYILIAGDTEDIPEMKDLKDPYTMTVSQAAKAARMF--SPKILYPYHYGDTKIGE........................... 211

FFAS is supported by the NIH grant R01-GM087218-01
1 0 8 9 4 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ginalski K, Grishin NV, Godzik A., Rychlewski L. Practical lessons from protein structure prediction. Nucleic Acids Res. 2005 Apr 1;33(6):1874-91.