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Query: 5a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRLELast
1 -106.0005a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1  ali model  100  1MGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRLE 245
2 -104.0003rkk_A mol:protein length:237 Beta-lactamase NDM-1  ali model follow..  97  1......SNANYMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR.. 237
3 -103.0004gyq_A mol:protein length:243 Beta-lactamase NDM-1  ali model follow..  98  2.NAIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGAADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR.. 243
4 -103.0004rl2_A mol:protein length:246 Beta-lactamase NDM-1  ali model follow..  100  4MGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR.. 246
5 -103.0004tyf_A mol:protein length:231 NDM-4  ali model follow..  99  3..............GDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGLVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR.. 231
6 -102.0003spu_A mol:protein length:265 Beta-lactamase NDM-1  ali model follow..  98  2PGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRKL 246
7 -100.0004exs_B mol:protein length:272 Beta-lactamase NDM-1  ali model follow..  99  28PGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRL. 271
8 -94.4001a7t_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  28  1...........AQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKG--------LPVPEHGFTDSLTVSLDGLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGNYGGTELIEHTKQIVNQYIES 228
9 -94.3001znb_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  28  1...........AQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKG--------LPVPEHGFTDSLTVSLDGLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGDYGGTELIEHTKQIVNQYIES 228
10 -92.4005a87_A mol:protein length:248 METALLO-BETA-LACTAMASE VIM-5  ali model follow..  33  5LAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDG-AVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRKAGVATYASPSTRRLAEAEG----NEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVLALSRTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVTAHKNR 244
11 -91.8002uyx_A mol:protein length:228 BETA-LACTAMASE II  ali model follow..  29  1.....ASQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEA-VPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHASRIGGIKTLKERGIKAHSTALTAELAKKNGYE--------EPLGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK..... 228
12 -90.8002nze_A mol:protein length:222 Beta-lactamase II  ali model follow..  30  1...........KTVIKNETGTISISQLNKNVWVHTELGSFNG-EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTAELAKKNGYE--------EPLGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK..... 222
13 -90.8003fcz_A mol:protein length:222 Beta-lactamase 2  ali model follow..  31  1...........KTVIKNETGTISISQLNKNVWVHTELGSFNGEA-VPSSGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDAIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYE--------EPLGDLQTVTNLKFGNVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVSKRYRNINAVVPSHGEVGDKGLLLHTLDLLK..... 222
14 -90.4001m2x_A mol:protein length:223 class B carbapenemase BlaB-1  ali model follow..  25  1....................DVKIEKLKDNLYVYTTYNTFNGTK-YAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKP--------RAQYTFDNNKSFKVGKFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLINEYQQK 218
15 -90.3003l6n_A mol:protein length:219 metallo-beta-lactamase  ali model follow..  24  1................QVKDFVIEPPIKNNLHIYKTFGVFGGKE-YSANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGKA--------TSTEIIKTGKPYRIGGFVVDFLGEGHTADNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIPGHDEWKGGGHVEHTLELLNK.... 218
16 -89.2002yz3_A mol:protein length:266 Metallo-beta-lactamase  ali model follow..  34  23LAFSVDSSGEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDG-AVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEG----NEIPTHSLEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNR 262
17 -89.1002y87_A mol:protein length:265 METALLO-B-LACTAMASE  ali model follow..  31  22AAYSAQPGGEYPTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTV-YSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHS----LKALSSSGDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHGLPGGLELLQHTTNVVKTHKVR 261
18 -88.9004uwo_B mol:protein length:266 METALLO-BETA-LACTAMASE VIM-26  ali model follow..  34  23LAHSGEPSGEYPTVNEIPVGEVRLYQIADGVWSHIATQSFDG-AVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEAEGNEIPTHS----LEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSANVLYGGCAVLELSSTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVKAHKNR 262
19 -88.6004wd6_A mol:protein length:233 Metallo-beta-lactamase  ali model follow..  29  1...............NDEVPELRIEKVKENIFLHTSYSRVNGFGLVSSNGLVVIDKGNAFIVDTPWSDRDTETLVHWIRK-NGYELLGSVSTHWHEDRTAGIKWLNDQSISTYATTSTNHLLKENKKE---------PAKYTLKGNESTLVDIEVFYPGGGHTIDNVVVWLPKSKILFGGCFVRSLDSEGLGYTGEAHIDQWSRSAQNALSRYSEAQIVIPGHGKIGDIALLKHTKSLAETASNK 222
20 -87.4002ynt_B mol:protein length:233 GIM-1 PROTEIN  ali model follow..  29  1...............SQGHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATD-RGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKP--------VPTHYFKDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEALGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNK 222
21 -87.4005acp_A mol:protein length:250 GIM-1 PROTEIN  ali model follow..  27  4.VLVFLILLVALPALAQGHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATD-RGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKP--------VPTHYFKDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEREGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNK 239
22 -86.8004ubq_A mol:protein length:229 Beta-lactamase  ali model follow..  32  1..............AGARLPDLKIEKLEEGVYVHTSFEEVNGWGVVSKHGLVVLVNTDAYLIDTPFTATDTEKLVNWFVE-RGYKIKGTISSHFHSDSTGGIEWLNSQSIPTYASELTNELLKKDGKVQAKNSF---------SGVSYWLVKIEVFYPGPGHTQDNVVVWLPEKKILFGGCFVKPDGLGNLG---DANLEAWPKSAKILMSKYVKAKLVVSSHSEIGDASLLKRTWEQAVKGLNE 220
23 -85.9004f6h_A mol:protein length:236 Beta-lactamase  ali model follow..  31  1...............AESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVE-RGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSF---------SGVNYWLVKIEVFYPGPGHTPDNVVVWLPERKILFGGGFIKPYGLGNLG---DANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE 219
24 -84.4001x8h_A mol:protein length:228 Beta-lactamase  ali model follow..  21  1...................AGMSLTQVSGPVYVV------EDNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWAEEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCILKEK----LGNLSFADVKAYPQTLERLKAMKLPIKTVIGGHDSPHGPELIDHYEALIKAAPQS 227
25 -84.2003q6v_A mol:protein length:233 Beta-lactamase  ali model follow..  17  2.................SEKNLTLTHFKGPLYIVED------KEYVQENSMVYIGTDGITIIGATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWGSKYPNLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHTKDGIFVYFPAERVLYGNCILKEN----LGNMSFANRTEYPKTLEKLKGLIEKVDSIIAGHDTPHDVGLIDHYLTLLEKAPK. 233
26 -81.7004bp0_A mol:protein length:250 METALLO-B-LACTAMASE  ali model follow..  22  2.........PKSSDHVDLPYNLTATKIDSDVFVVT------DRDFYSSNVLVAKMLDGVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENKKDRSHPVPADNVFDLKQGKVFSFSNVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGYLG---DANVKAWPDSARRLKKF--DAKIVIPGHGEWGGPEMVNKTIKVAEKAVGE 247
27 -34.1002zwr_A mol:protein length:207 Metallo-beta-lactamase superfamily protein  ali model follow..  18  9...........................................GPLQENAYLVETGEGPVLIDPGDE---PEKLLALFQTT-GLIPLAILLTHAHFDHVGAVAPLVEADLPVYLHPLDLPLYEGADLAARAIPKPPLPVRPLEEGMRL---GFQVLHL-PGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRY-DLPGADPKALFASLKRLLSL-PPETRVHPGHGPGTTLGLEARTNPFLTGLEWE 206
28 -33.8002p97_A mol:protein length:201 Hypothetical protein  ali model follow..  12  6..........................HRPDLYSWSTFNPARN---IDFNGFAWIRPEGNILIDPV---ALSNHDWKHLESLGG--VVWIVLTN--SDHVRSAKEIADQYTKIAGPVAEKENFPIY------------CDRWLSDGDELVPG-LKVMELQGSKTPGELALLLEE-TTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLLEKVEAVLVGDGWSVFRDGRDRLKELVATLA.. 201
29 -33.8001sml_A mol:protein length:269 PROTEIN (PENICILLINASE)  ali model follow..  18  18..................LQPMAPLQIADHTWQI---------GTEDLTALLVQTPDGAVLLDGG-MPQMASHLLDNMKARTPRDLRLILLSHAHADHAGPVAELKRRGAKVAANAESAVLLARGGSDDLHTYPPANADRIVMDGEVITVGGIVFAHFMAGHTPGSTAWTWTDTRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRAL--PCDVLLTPHPGASNWDYAAGARAGAK..... 242
30 -33.4002q0j_A mol:protein length:321 Quinolone signal response protein  ali model follow..  17  5......................SSGLVPRGSHMLR-DDDLCLLGDVQVPVFLLRGEASWALVEGGISRD-AELVWADLCRADPSQVHYWLITHKHYDHCGLLPYLCPRNVQVLASERTCQAWKSESAVRVVERLNRLPVRAVADGEWLELGPLQVIE-AHGHSDDHVVFYDVRRRRLFCGDALFDEAEGVWRPLVFDDMEAYLESLERLQRL-PTLLQLIPGHGGLLRGRLAADGAE........ 249
31 -32.9003vpe_A mol:protein length:262 Metallo-beta-lactamase  ali model follow..  16  6..................SSPQQPFTIYGNTHYV---------GTGGISAVLLSSPQGHILVDGT-TEKGAQVVAANIRAMKLSDVKYILSTHSHEDHAGGISAMQKLGATVLAGAANVDTLRTGVSPKSDPQFGSAKVRAVADGELVKLGPLAVAHATPGHTEGGITWTWQSCEVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEKL--SCDIAIAAHPEVND................. 220
32 -32.5002zo4_A mol:protein length:317 Metallo-beta-lactamase family protein  ali model follow..  14  1.......................MKALLPGLYLLPVPIPYP-------NLYLLQGAGEVALVDTALGTRAARGALELHLAELGQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAENPLKDFLRSLDRLADL--GARVAYAGHFGP--EELKAHHQARLEALLA. 260
33 -32.3003lvz_A mol:protein length:294 Blr6230 protein  ali model follow..  15  35..................TAPFEPFQLIDNIYYV---------GTDGIAVYVIKTSQGLILMDTA-MPQSTGMIKDNIAKLKVADIKLILNTHAHLDHTGGFAEIKKEGAQLVAGERDKPLLEGGYYPGDEAFPAVKVDRAVKEGDRVTLGDTTLAHATPGHSPGCTSWEMTVKDVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAM--KIDVLLGPHPEVYG................. 247
34 -32.2001jt1_A mol:protein length:263 FEZ-1, class B3 metallo-beta-lactamase  ali model follow..  12  1..............AYPMPNPFPPFRIAGNLYYV---------GTDDLASYLIVTPRGNILINSDLEAN-VPMIKASIKKLKFSDTKILLISHAHFDHAAGSELIKQQKAKYMVMDEDVSVILSGGKSDFHYFTQSTVDKVLHDGERVELGGTVLAHLTPGHTRGCTTWTMKLKDAVIIGSIGVNPGYKLVDNITPKIAEDYKHSIKVLESM--RCDIFLGSHAGMFD................. 220
35 -31.8004p62_A mol:protein length:295 Metallo-beta-lactamase AIM-1  ali model follow..  17  38..................NDPAMPQKVYGNTWYV---------GTCGISALLVTSDAGHILVDAA-TPQAGPQILANIRALRPEDVRAIVLSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGLPDRTDPQFPVANIVTLADDGVVSVGPLALAVASPGHTPGGTSWTWRDCRQMVYADSLTAISDDVYRYSDDGYLAAFRNTLARVAAL--DCDILVTPHPSASG................. 255
36 -31.6004awy_B mol:protein length:303 METALLO-BETA-LACTAMASE AIM-1  ali model follow..  17  38..................NDPAMPLKVYGNTWYV---------GTCGISALLVTSDAGHILVDAA-TPQAGPQILANIRALRPEDVRAIVFSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGLPDRTDPQFPVANIVTLADDGVVSVGPLALAVASPGHTPGGTSWTWRDCRQMVYADSLTAISDDVFRYSDDGYLAAFRNTLARVAAL--DCDILVTPHPSASG................. 255
37 -31.6005aeb_A mol:protein length:272 LRA-12  ali model follow..  15  2..MASQKVKEPTVSNADWSKPYRPFRIAGNLYYI---------GTYDLACYLITTKQGNIIVNTGLAAS-ALQIKNNIKALKLTDTKILLTTQAHYDHLGAMAEIKKIGAKLMADEGDATVMADGGSSDYSMFEPIIADRLLHDKDTIQLGDTKLMLHHPGHTKGSCSFLFDTKDEQRSYRILIANMPTIVIEKKPGIAKDYAYTLQAMKNL--SFDIWVASHASQFS................. 232
38 -31.3005iqk_A mol:protein length:271 beta-lactamase Rm3  ali model follow..  13  11..................NADQAPFRLFGNTYYV---------GMKGLSSVLVTSPQGHVLIDGG-LPESAPKIIANIGALRIEDVKLILNSHGHIDHAGGLAELQRRNALVAASPSAALDLASGEVGPDDPQYPVKDMRLARDGGQFNVGPVYLAHATPGHTPGGLSWTWQSCDGPRCLNMVYADSINAVSRPGPNALADLRHSFETLEKL--PCDVLISAHPEASQ................. 228
39 -29.9003adr_A mol:protein length:261 Putative uncharacterized protein ST1585  ali model follow..  13  20...............................................ATVYVMCGEKLTVMIDAGVSNSIADFSFL-------DKLDYIVLTHLHIDHIGLLPELLQVKAKVLVKSGFKKYLTSEDGLKLEKKLDQDKVIEVEGNEEFDLGGYRMRLI-PGHARHHMSVLV--DDFLFTGDSAGAYFNGVVIPTPVIDYKMYMESLKRQIELKP--KVVGFAHGGLVSPKIMEEHLKQMLSKEE. 228
40 -28.3001ztc_A mol:protein length:221 hypothetical protein TM0894  ali model follow..  12  29...............................................STVVYLEHKDRRIIIDPGNLSS-MDELEEKFSELGISPITDVLFTHVHLDHIFNSVLFENATFYVHEVYKTKNYLSFGGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHT-PWHAREHLSFLLDTENVLITGDITPNRL-----SYYDIIKGYGSVQVKNFLDRVGRIDLLVFPHDAP................... 208
41 -28.3004v0h_A mol:protein length:266 METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROT  ali model follow..  15  21VVVLLQGYAEPEGVGDAVRADGSVTLVLPQTRGPASSHRESPRGSGGAEAALEEAARGPILVDTGGPWAR-EALLGALAGQGVAPVTLVVGTHGHSDHIGNLGLFPGAALLVSHDFCLPGGRYLPHGLGEGQPLRLGP-------------GLEVWAT-PGHGGQRDVSVVVAGTVVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVV---ADVVVPGHGPP................... 234
42 -26.6004ad9_A mol:protein length:289 BETA-LACTAMASE-LIKE PROTEIN 2  ali model follow..  16  8......................RVERLSNRVVRVLG-CNPGPMTLQGTNTYLVGTGPRRILIDTGEIPEYISCLKQALTE-FNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVLYT-PGHTDDHMALLLEEENAIFSGDCILGEGTTVF-----EDLYDYMNSLKELLKI--KADIIYPGHGPV--HNAEAKIQQYISHRNIR 221
43 -25.5005i0p_A mol:protein length:366 Beta-lactamase domain protein  ali model follow..  14  1MAMNALEHQLDYPFADTLPAAGDTFEVAPGVRWLRMPLPFS-------NLWLL-GQAGWTIVDCGISSEAIRTHWEQIRHLDGLPVLRVLVTHCHPDHFGLANWLCEGNVRLWMTAAAADHFARHGLTDPAALDKLRSRRRLREGDAVKIGART-VVTGYGHSPEHCALHSEADGVLISGDMVLPRISTNVSVFDLEPLALYLESLGRYETM-APDTLVLPSHGKP--AQLRAHHDARLEEVRV. 298
44 -25.4002xf4_A mol:protein length:210 HYDROXYACYLGLUTATHIONE HYDROLASE  ali model follow..  11  11.............................................FSQNCSLIWCEQLAALVDPGGD---AEKIKQEVDAS-GVTLMQILLTHGHLDHVGAASELAQHGVPVIGPEKEDEFWLQGLPAQSRECQPLTPDRWLNDGDRVSVGNVTLVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRS-DFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQ..... 209
45 -25.1002r2d_A mol:protein length:276 Zn-dependent hydrolases  ali model follow..  10  41.............................................IPVSAYLIQCTDATVLYDTGCHPESECNLPERLRQLGLSPISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGHASGMLGLAVRLEKFLLVSDACYTATNYGPPARRAGDTIGYDRTVSHIRQYAESRSLVLFGHDREQFASLIKSTDGFYE..... 276
46 -24.3003dha_A mol:protein length:254 N-Acyl Homoserine Lactone Hydrolase  ali model follow..  12  1.........GRISMTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVDRIVNILKRVGYEPLLYIISSHLHFDHAGGNGAFT--NTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEV-VPGVQLLYT-PGHSPGHQSLFIETEQVLLTIDASYKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKIIFFGH-DIEQEKSCRVFPEYI...... 254
47 -24.1002br6_A mol:protein length:252 AIIA-LIKE PROTEIN  ali model follow..  12  2............DMTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVDRIVNILKRVGYEPLLYIISSHLHFDHAGGNGAFT--NTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEV-VPGVQLLYT-PGHSPGHQSLFIKTEQVLLTIDASYKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKIIFFGH-DIEQEKSCRVFPEYI...... 252
48 -23.6001qh3_A mol:protein length:260 PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE)  ali model follow..  15  9.............................................LTDNYMYLVIDDEAAIVD----PVQPQKVVDAARKH-GVKLTTVLTTHHHWDHAGGNEKLVKLGLKVYGGDDRIGAL----------------THKITHLSTLQVGSLNVKCLAPCHTSGHICYFVSEPPAVFTGDTLFVAGC---GKFYEGTADEMCKALLEVLGRLPPDTRVYCGH---------EYTINNLKFARH. 185
49 -23.5001xm8_A mol:protein length:254 glyoxalase II  ali model follow..  20  9.............................................LKDNYAYILHDEDVGVVDPS----EAEPIIDSLKRS-GRNLTYILNTHHHYDHTGGNLELKDRGAKVIGSAMDKDRIPGIDMALKDG-----------DKWMFAGHEVHVMDT-PGHTKGHISLYFPGSRAIFTGDTMFSLSC---GKLFEGTPKQMLASLQKITSL-PDDTSIYCGHEYTLSNSKFALSLE........ 183
50 -23.2004fek_A mol:protein length:262 Putative diflavin flavoprotein A 5  ali model follow..  11  2..............SDSKPRDVQVLPIATNTKVLRAEIEYALERGTTSNS-YVIEGDKTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELQITFVCSLPAAGDLRAAFPDDNLNI------LPMRGKETLDLGKLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFKEDQRYYFNCLMAPHAIHVEAALEKISDL--QVRLYAVGHGPLVRTSLIALTQAYADWSKAQ 253
51 -22.6003aj3_A mol:protein length:274 4-pyridoxolactonase  ali model follow..  13  2...................SDTKVYLLDGGSLVLDGYHVFWNRGRFPVYSILIEHAEGRFLIDTGYDYEKHQTIPGALGLLGLEPIDVVVNSHFHFDHCGGNKYFPHAKKICHRSEAEAAEARGATAQLLEGTTRANSTFEGIDGDVDLARGVKLIST-PGHSIGHYSLLVEFPRILFTIDAAYTQKSTLCQAAFHIDPVAGVNSMRKVKKLAEDHGALMYSHDMDNFKTYRTGTQFY....... 267
52 -20.9002p18_A mol:protein length:311 Glyoxalase II  ali model follow..  15  31.............................................LKDNFSYLINDHTLAAVDVNAD---YKPILTYIEEHLKQTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVV--------GANDSIPAVTKPVREGDRVQVGDLSVEVIDPCHTRGHVLYKVQHPQALFTGDTMFIAGI---GAFFEGDEKDMCRAMEKVYHIHDKVTFIFPGH---------EYTSGFMTFSEK. 232
53 -20.8004chl_A mol:protein length:238 PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL  ali model follow..  18  28......................................................ESREAVLIDP----ETAPRDAQLIKEL-GLRLLYAVNTHCHADHITGSGLLRSL--------------LPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRAPGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDFQQGCAKTLYHSVHEKIFTL-PGDCLIYPAHD..................... 180
54 -20.3003esh_A mol:protein length:280 Protein similar to metal-dependent hydrolase  ali model follow..  1MKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKESHIIADLANLTPKDIDYVLMTHMHFDHAAGLTDQAGHNAIHVVQQDEWHEFIAPNIRS-KSTYWDKNKGDYSNKLILFEKHFEPMQHSGGHSFGHTIITIESDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKIPYFIQQQYWFLFYHDENYFAVKYSDDGENIDAY... 270
55 -19.6002ohh_A mol:protein length:404 Type A flavoprotein fprA  ali model follow..  15  2....................KAAAKRISDGVY-WTGVLDWD--QGTTYNAYLVCGDEGVALIDNGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRREAPIYCTEVAVKGLLKHYPSLREAEFMTVKT---GDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDALMDAARKFYANLITPLSKLVLKKFDEVKELLERIQMIAPSHGQI................... 236
56 -19.6004xuk_A mol:protein length:291 Putative hydrolase  ali model follow..  15  13....................DVQITALLDGTILKKYYADQEKGVQTSINAFLVNIGKSLILIDSGAASCFGSSVLSNLKASGYQPVDTILLTHLHPDHVCGISYVSNDEASFWLDPKQAAKLPKEKQANYLGTVEKIKQAIYQAKQRFKTYKLGDDIQGAGHTPGHFSYELKTESIVFIGDIVHSHTVPETAIEYDIDPKKAVETRLKQFANFAKNGQTIPGIGHTYSAD............... 278
57 -19.2004ysb_A mol:protein length:233 Metallo-beta-lactamase family protein  ali model follow..  18  22......................................................ATRQAVLIDP----EQVDRDLQMVAEL-DLTLTHVFDTHVHADHITASGALRERQATVVGSVNGASCA----------------NVQVRHGDEVRVGQLVFQVL-PGHTDDSISYLLGDR--VFTGDALLVRGNGRTDFQNGNASQLYDSLTRVLFTL-PDETLVYPGHD..................... 171
58 -19.2004le6_A mol:protein length:324 Organophosphorus hydrolase  ali model follow..  14  44....................DFEVTALYDGYLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQCFGPVVQTNLKASGYQPVDTVLLTHLHPDHACGLVEVPQAEAEFWLDEATMAKAPEGMQGMFKMAQQAVAPYAKMNKLKPYKTEGELLVASPGHTPGHTSYLFKSQSLLVWGDILLNHAVPEVVFEFDVDSDQARQSRQRILAEAATDKLWVPGLGHV................... 303
59 -19.1004o98_A mol:protein length:337 organophosphorus hydrolase  ali model follow..  14  44....................DFEVTALYDGYLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQCFGPVVQTNLKASGYQPVDTVLLTHLHPDHACGLVEVPQAEAEFWLDEATMAKAPEGMQGMFKMARQAVAPYAKMNKLKPYKTEGELLVASSGHTPGHTSYLFKSQSLLVWGDILINHAVPEVVWEFDVDSDQARQSRQRILAEAATDKLWVPGLGHV................... 303
60 -18.8001e5d_A mol:protein length:402 RUBREDOXIN:OXYGEN OXIDOREDUCTASE  ali model follow..  10  1.....................MQATKIIDGFHDFHGYTLSPMGTTYNA---YLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEAPEKIFTSSLGQKAMESHFHYKDWPV------QVVKHGETLSLGKRTVTFYET-HWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLLKAIETLVGAGVAPEFICPDHGVI................... 229
61 -18.8002gcu_A mol:protein length:245 Putative hydroxyacylglutathione hydrolase 3  ali model follow..  19  27.......................................................DKPALLIDP----KTVDRDLKLIDEL-GLKLIYAMNTHVHADHVTGTGLLKTKGVKSVISKASGSKA----------------DLFLEPGDKVSIGDIYLEVRAPGHTAGCVTYVTPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIFTL-PKDTLIYPAHD..................... 184
62 -18.8002q9u_A mol:protein length:414 A-type flavoprotein  ali model follow..  10  2...............SSKPKYVQDQEMIPGVY-VRIFHGYHTDEGSSYNSYFID-DECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKNATFVCTKKCQEHLKILYGMEKATW------LIVDDKYTLKIGKRTLKFIPV-HWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMKALEVASTV--EIKYILSAHGVSWRGDAMGLAIAEYDRWSK. 251
63 -18.5004d02_A mol:protein length:479 ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDO  ali model follow..  12  3........................IVVKNNIH-WVGQRDYKTLRGSSYNSYLIR-EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQDTPIYCTANAIDSINGPEWNF----------NVVKTGDTLDIGNLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADY 245
64 -18.5001ycf_A mol:protein length:398 Nitric oxide reductase  ali model follow..  10  2......................QPVAITDGIY-WVGAVDFSTHRGTTYNAYLIV-DDKTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELDAHVLCTQRAFDSLKAHYSHIDFNY------TIVKTGTSVSLGKRSLTFIEA-HWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQ 249
65 -18.3004zo2_A mol:protein length:294 Acylhomoserine lactonase  ali model follow..  16  60................................................NILLVKTKEKLILMDTGMGIERTGFLLKSLQKAGFSAITDIFLSHAHPDHIGGVVFISKIEHDFWINASIKDFNNSALKAHPERLNQIIPALQIQPKLKFYDLNKTLYQLAPGHTPGLTVTTISSEKLMYVADLIHSDVIPDWGFSGDTDLDIATASRKKFLKQLADTKARAPGLGFT................... 278
66 -18.2001p9e_A mol:protein length:331 Methyl Parathion Hydrolase  ali model follow..  17  54....................DFEITALSDGTQSALAKSFQKAPLETSVTGYLVNTGSKLVLVDTGAAGLFGPRLAANLKAAGYQPVDEIYITHMHPDHVGGLDFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPGIKALASHG--HTPGHTTYVVESQKLALLGDLILVAAVPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIPGIGHI................... 311
67 -17.5003r2u_A mol:protein length:466 Metallo-beta-lactamase family protein  ali model follow..  16  30...............................................SQASYLIGCQKAMIID----PIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKNANIY--------VSGESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVL-PGHTPESISFLLTDEGGLFSGDFIFVGKAVKVEGSSEIGAKQMFKSIESIKDL-PDYIQIWPGHGA.................... 215
68 -17.3003tp9_A mol:protein length:474 BETA-LACTAMASE and RHODANESE DOMAIN PROTEIN  ali model follow..  15  15...............................................AHASYLVGCQEACVID----PARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRGAAICVSD-------EGPPEWKSEYVKAYPHRLLKDGDELHFGNVRIVVM-PGHTPEHVSYLLYDGKALFSGDFVFVGRVAGESGSSEALARQMFRSLRKFEAL-PDHVQVLPAHGA.................... 201
69 -17.2001vme_A mol:protein length:410 Flavoprotein  ali model follow..  11  12.....................TERIFDDPEIYIRYFEAVWEIPEGISYNAYLVKLNGANVLIDG-WKGNYAKEFIDALSKIVDKEITHIIVNHTEPDHSGSLPATLKTDVEIIASNFGKRLLEG---------YGIKDVTVVKDGEEREIGGKKFKFVMT-HWPDTMVTYL--DGILFSCDVGGYLLPEILDDSNESVVERYLEGAEKLSSL--KIKALLPGHGLIWKKDPQRLLNHYVSVAKGD 256
70 -16.0004nur_A mol:protein length:633 PSdsA  ali model follow..  13  89.......................LFEVTDGIYQVRNYD--------LSNMTIVEGKDGITIFDPLISQETAKAALDLYYKHRKKPVVAVIYTHSHVDHYGGVRGVVDEAVKIYAPLGFLEHAVAENTTSAGTVTLIPPTDIIKETHVIDGLTYEFMYAPGSEAPAEMLYYIKEKKALNAAEDSTHTNTYSLRGAKIRDPLAWSKYLNEALKLWGDDVQVMPVWGNKEVREQLSLQRDMYRYINDE 353
71 -15.9002cfu_A mol:protein length:658 SDSA1  ali model follow..  13  107.......................LFEVAEGIYQVRGFD--------LANITFIRGDSGWIVVDTLTTPATARAAYELVSRELERPIRTVIYSHAHADHFGGVRGLVEPQVQIIAPAGFMEAAIKENGLARGPLSLLAPTRLIEEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENVVGTNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMPRWGNAEIVEVLEKQRDLYGYLHDQ 371
72 -15.8004pdx_A mol:protein length:640 Putative alkyl/aryl-sulfatase YjcS  ali model follow..  12  89.......................LFKVTDKMYQVRGQD--------ISNITFVEGEKGIIVIDPLVTPPAAKAALDLYFQHRQKPIVAVIYTHSHTDHYGGVKGIISEAVQVIAPAGFMDEAISENTLATGDPSIIAPTKTIVEKMIIDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTNFYTLRGAKTRDTSKWTEYLNETLDMWGNDAEVLPVWGNKHINDYIGKYRDTIKYIHDQ 353
73 -15.5002yhe_A mol:protein length:668 SEC-ALKYL SULFATASE  ali model follow..  13  117.......................LFEVMPKLYQVRGLD--------PANMTIIEGDSGLVLIDTLTTAETARAALDLYFQHRKKPIVAVVYSHSHIDHFGGARGIIDEAVKVFAPSGFMEHAVSENTATNATNTLVAPNVLIEERHTVDGVELEFQLTLGSEAPSDMNIYLPQFKVLNTADNAPPANLLTPRGAEVRDAKAWAGYIDASLEKYGDRTDVLPVWGGDKVRTYLADQRDMYAFLNNR 382
74 -15.2003kl7_A mol:protein length:235 Putative metal-dependent hydrolase  ali model follow..  14  29.............................................IKHGSLMLTYDNHSIQVDPVSEYADYTTF---------PKADIILITHEHGDHLDAIQAVEKSDTEIIANENSQKKLGKGKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNG-YILTFDGLRVYIAGDTEDIPEMKDLKDINQPYTMTVSQAAKAARMFSP--KILYPYHYGDTKIGELKDALK........ 217
75 -15.2002az4_A mol:protein length:429 hypothetical protein EF2904  ali model follow..  10  14.........................................GILTIGGTVIEVAYKDAHIFFDFGTETLINNRLVPELKDLYDPRLGYVFLSHAHLDHS-RMINYLDPAVPLYTLKETKMILNSLNRKPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGLLIRTPDHFITYTGDLRLHGHNRE-------ETLAFCEKAKHTELLMMEGVSISFPEREPDPAQIAVVSEEDLVQ.... 242

FFAS is supported by the NIH grant R01-GM087218-01
1 1 3 5 7 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Awobuluyi M, Yang J, Ye Y, Chatterton JE, Godzik A, Lipton SA, Zhang D. Subunit-specific roles of glycine-binding domains in activation of NR1/NR3N-methyl-D-aspartate receptors. Mol Pharmacol. 2007 Jan;71(1):112-22. Epub 2006 Oct 17.