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Query: 5acp_A mol:protein length:250 GIM-1 PROTEIN, from PDB0516

Results of FFAS03 search in PDB0516
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNVLVFLILLVALPALAQGHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEREGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNKLMQPTAEASADLast
1 -105.0005acp_A mol:protein length:250 GIM-1 PROTEIN  ali model  100  1MKNVLVFLILLVALPALAQGHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEREGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNKLMQPTAEASAD 250
2 -102.0002ynt_B mol:protein length:233 GIM-1 PROTEIN  ali model follow..  98  1.................SQGHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATDRGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDDEFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEALGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASNKLMQPTAEASAD 233
3 -97.1004wd6_A mol:protein length:233 Metallo-beta-lactamase  ali model follow..  52  3...................EVPELRIEKVKENIFLHTSYSRVNGFGLVSSNGLVVIDKGNAFIVDTPWSDRDTETLVHWIRKNGYELLGSVSTHWHEDRTAGIKWLNDQSISTYATTSTNHLLKENKKEPAKYTLKGNESTLVDGLIEVFYPGGGHTIDNVVVWLPKSKILFGGCFVRSLDSEGLGYTGEAHIDQWSRSAQNALSRYSEAQIVIPGHGKIGDIALLKHTKSLAETASNKSIQPNANASAD 233
4 -94.3004ubq_A mol:protein length:229 Beta-lactamase  ali model follow..  43  1................AGARLPDLKIEKLEEGVYVHTSFEEVNGWGVVSKHGLVVLVNTDAYLIDTPFTATDTEKLVNWFVERGYKIKGTISSHFHSDSTGGIEWLNSQSIPTYASELTNELLKKDGKVQAKNSFSGVSYWLVKNKIEVFYPGPGHTQDNVVVWLPEKKILFGGCFVKPDG---LGNLGDANLEAWPKSAKILMSKYVKAKLVVSSHSEIGDASLLKRTWEQAVKGLNESKKPSQPS... 228
5 -93.7004f6h_A mol:protein length:236 Beta-lactamase  ali model follow..  44  1.................AESLPDLKIEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKKDGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGGFIKPYG---LGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNESKKPSKPSNW. 229
6 -92.4001a7t_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  33  1.............AQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKGLPVPEHGFTDSTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGNYGGTELIEHTKQIVNQYIESTSKP....... 232
7 -92.2001znb_A mol:protein length:232 METALLO-BETA-LACTAMASE  ali model follow..  32  1.............AQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTETLVNWVADLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFTDSTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGDYGGTELIEHTKQIVNQYIESTSKP....... 232
8 -90.1001m2x_A mol:protein length:223 class B carbapenemase BlaB-1  ali model follow..  32  1......................DVKIEKLKDNLYVYTTYNTFNGTK-YAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKPRAQYTFDNNSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLINEYQQKQKAS....... 222
9 -89.8002uyx_A mol:protein length:228 BETA-LACTAMASE II  ali model follow..  35  1.......ASQKVEKTVIKNETGTISISQLNKNVWVHTELGSFNGEA-VPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKFQKRVTDVIITHAHASRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK................ 228
10 -89.4003spu_A mol:protein length:265 Beta-lactamase NDM-1  ali model follow..  27  4....EIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAANGWVEPAAPNFGP--LKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRKLVPRGSAAAALE 257
11 -89.4002nze_A mol:protein length:222 Beta-lactamase II  ali model follow..  35  2..............TVIKNETGTISISQLNKNVWVHTELGSFNGEA-VPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKFQKRVTDVIITHAHADHIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK................ 222
12 -89.3003l6n_A mol:protein length:219 metallo-beta-lactamase  ali model follow..  27  1..................QVKDFVIEPPIKNNLHIYKTFGVFGGKE-YSANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKHNLPVVAVFATHSHDDRAGDLSFFNNKGIKTYATAKTNEFLKKDGKATSTEIIKTGPYRIGGEEFVVDFLGEGHTADNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIPGHDEWKGGGHVEHTLELLNK............... 218
13 -88.6003fcz_A mol:protein length:222 Beta-lactamase 2  ali model follow..  35  2..............TVIKNETGTISISQLNKNVWVHTELGSFNGEA-VPSSGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKFQKRVTDAIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVSKRYRNINAVVPSHGEVGDKGLLLHTLDLLK................ 222
14 -87.4005a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1  ali model follow..  27  2...GEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAANGWVEP-ATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRLE........... 245
15 -87.3003rkk_A mol:protein length:237 Beta-lactamase NDM-1  ali model follow..  29  6.............METGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAANGWVEPAAPNFGP--LKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR............. 237
16 -87.2004tyf_A mol:protein length:231 NDM-4  ali model follow..  29  3................GDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGLVAANGWVEP-ATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR............. 231
17 -86.6004gyq_A mol:protein length:243 Beta-lactamase NDM-1  ali model follow..  27  2...NAIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAANGWVEP-ATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGAADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR............. 243
18 -85.8004rl2_A mol:protein length:246 Beta-lactamase NDM-1  ali model follow..  27  2SHMGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAANGWVEPAAPNFGP--LKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR............. 246
19 -84.7004exs_B mol:protein length:272 Beta-lactamase NDM-1  ali model follow..  27  13LSTALAAALMLSGCMPGEIRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAANGWVEP-ATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRL............ 271
20 -81.2005a87_A mol:protein length:248 METALLO-BETA-LACTAMASE VIM-5  ali model follow..  33  17..............TVNEIPVGEVRLYQIADGVWSHIATQSFDGAV-YPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKIGLPVTRAVSTHFHDDRVGGVDVLRKAGVATYASPSTRRLAEAEGNEIPTHSLEGDAVRFGP--VELFYPGAAHSTDNLVVYVPSANVLYGGCAVLALSRTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVTAHKNRSVA........ 247
21 -81.0002y87_A mol:protein length:265 METALLO-B-LACTAMASE  ali model follow..  33  4IRSFLVGISAFVMAVLGSAPVGEVRLYKIGDGVWSHIATQKLGDTV-YSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKSSGDVVRFGPVEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHGLPGGLELLQHTTNVVKTHKVRPVA........ 264
22 -79.7004uwo_B mol:protein length:266 METALLO-BETA-LACTAMASE VIM-26  ali model follow..  32  1MLKVISSLLVYMTASVMAIPVGEVRLYQIADGVWSHIATQSFDGAV-YPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEAEGNEIPTHSLEGDAVRFGP--VELFYPGAAHSTDNLVVYVPSANVLYGGCAVLELSSTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGHGLPGGLDLLQHTANVVKAHKNRSVA........ 265
23 -78.9002yz3_A mol:protein length:266 Metallo-beta-lactamase  ali model follow..  33  5LSKLLVYLTASIMAIASPIPVGEVRLYQIADGVWSHIATQSFDGAV-YPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGDAVRFGP--VELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHGLPGGLDLLKHTTNVVKAHTNRSVV........ 265
24 -76.4003q6v_A mol:protein length:233 Beta-lactamase  ali model follow..  21  2...................SEKNLTLTHFKGPLYIVED------KEYVQENSMVYIGTDGITIIGATWTPETAETLYKEIRKSPLPINEVINTNYHTDRAGGNAYWKTLGAKIVATQMTYDLQKSQWKSLPDTVFPG-DFNLQNGSIRAMYLGEAHTKDGIFVYFPAERVLYGNCILKEN----LGNMSFANRTEYPKTLEKLKGLILKVDSIIAGHDTIHDVGLIDHYLTLLEKAPK............ 233
25 -76.0004bp0_A mol:protein length:250 METALLO-B-LACTAMASE  ali model follow..  29  3............KSSDHVDLPYNLTATKIDSDVFVVTDRDF------YSSNVLVAKMLDGVVIVSSPFENLGTQTLMDWVAKMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENPADNVFDLKQGVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKE---LGYLGDANVKAWPDSARRLKK--FDAKIVIPGHGEWGGPEMVNKTIKVAEKAVGEMR......... 249
26 -73.6001x8h_A mol:protein length:228 Beta-lactamase  ali model follow..  21  1.....................AGMSLTQVSGPVYVVE------DNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWLVLPNVVHDG-DFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCILKEK----LGNLSFADVKAYPQTLERLKAMKLPIKTVIGGHDSPHGPELIDHYEALIKAAPQSS.......... 228
27 -34.3003lvz_A mol:protein length:294 Blr6230 protein  ali model follow..  17  1MRRLTAALCALTLLSTGAQATAPFEPFQLIDNIYYV---------GTDGIAVYVIKTSQGLILMDTA-MPQSTGMIKDNIAKLGADIKLILNTHAHLDHTGGFAEIKKEGAQLVAGERDKPLLEGPAVKVDRAVKEGDRVTLGDTTLTAHAT-PGHSPGCTSWEMTVKDVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKA--MKIDVLLGPHPEVYGMQA-GELVTYATSLSEDFDKQLAKQTAA 290
28 -33.8004p62_A mol:protein length:295 Metallo-beta-lactamase AIM-1  ali model follow..  16  1MKRRFTLLGSVVALALSSTANDPAMPQKVYGNTWYV---------GTCGISALLVTSDAGHILVDAAT-PQAGPQILANIRALGEDVRAIVLSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGLPDRTDPQFDDGVVSVGPLALTAVAS-PGHTPGGTSWTWRDCRQMVYADSLTAISDDVYRYSDDGYLAAFRNTLARVAA--LDCDILVTPHPSASGLWN-TACRRYAQGARQRLEKRLAEEAA. 294
29 -33.6002zwr_A mol:protein length:207 Metallo-beta-lactamase superfamily protein  ali model follow..  20  11...............................................LQENAYLVETGEGPVLIDPGDE---PEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEADLPVYLHPLDLPLYEGAGLAIPKPPLPVRPLEEGMRLFGFQVL-PGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDL-PGADPKALFASLKRLLSL-PPETRVHPGHGPGTTLGLEARTNPFLTGLE............. 204
30 -33.6004awy_B mol:protein length:303 METALLO-BETA-LACTAMASE AIM-1  ali model follow..  16  1MKRRFTLLGSVVALALSSTANDPAMPLKVYGNTWYV---------GTCGISALLVTSDAGHILVDAA-TPQAGPQILANIRALGEDVRAIVFSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGLPDRTDPQFDDGVVSVGPLALTAVAS-PGHTPGGTSWTWRDCRQMVYADSLTAISDDVFRYSDDGYLAAFRNTLARVAA--LDCDILVTPHPSASGLWN-TACRRYAQGARQRLEKRLAEEAAT 295
31 -32.7002q0j_A mol:protein length:321 Quinolone signal response protein  ali model follow..  14  5........................SSGLVPRGSHMLR-DDDLCLLGDVQVPVFLLRGEASWALVEGGISRDAELVWLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRNVQVLASERTCQAWKSESAVRVVERLDGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALFDEAEGVWRPLVFDDMEAYLESLERLQR-LPTLLQLIPGHGGLLRADGAESAYTECLRLCRRLLWRQSMGES. 271
32 -32.7001sml_A mol:protein length:269 PROTEIN (PENICILLINASE)  ali model follow..  17  18....................LQPMAPLQIADHTWQI---------GTEDLTALLVQTPDGAVLLDGG-MPQMASHLLDNMKARGRDLRLILLSHAHADHAGPVAELKRRGAKVAANAESAVLLARGGANADRIVMDGEVITVGGIVFTAHFM-AGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLPHLIEDYRRSFATVRA--LPCDVLLTPHPGASNWDY-LTCKAYADAAEQKFDGQLAKETAG 267
33 -32.0003adr_A mol:protein length:261 Putative uncharacterized protein ST1585  ali model follow..  16  20.................................................ATVYVMCGEKLTVMIDAGVSNSIADFSFL------DKLDYIVLTHLHIDHIGLLPELLQVKAKVLVKSGFKKYLTSEDGLKKLNE-GNEEFDLGGYRMRLIYT-PGHARHHMSVLV--DDFLFTGDSAYFNGVVIPTTPPVIDYKMYMESLKRQIE--LKPKVVGFAHGGLVSPKIMEEHLKQMLSKEEIQINVDIGGVAG 240
34 -31.6003vpe_A mol:protein length:262 Metallo-beta-lactamase  ali model follow..  15  6....................SSPQQPFTIYGNTHYV---------GTGGISAVLLSSPQGHILVDGT-TEKGAQVVAANIRAMGSDVKYILSTHSHEDHAGGISAMQKLGATVLAGAANVDTLRTGVSPKSDPQFDGELVKLGPLAVKAHAT-PGHTEGGITWTWQSCEVVFADSLTAVSADSYRFSDHPEVVASLRGSFEAVEK--LSCDIAIAAHPEVNDMWT-GACRAIAAAGRKRLETRLAS.... 259
35 -31.5002zo4_A mol:protein length:317 Metallo-beta-lactamase family protein  ali model follow..  14  1.........................MKALLPGLYLLP----PIPYPLKTVNLYLLQGAGEVALVDTALGTRAARGALAELGLCFQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHEASWRLFLDHGTPEGALQ-DGEALEVAGKRLRVLW-TPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAENPLKDFLRSLDRLAD--LGARVAYAGHFGP--EELKAHHQARLEALLALLDGPKTA.... 268
36 -31.3001jt1_A mol:protein length:263 FEZ-1, class B3 metallo-beta-lactamase  ali model follow..  11  5....................PNPFPPFRIAGNLYYV---------GTDDLASYLIVTPRGNILINSDLEAN-VPMIKASIKKLGSDTKILLISHAHFDHAAGSELIKQQKAKYMVMDEDVSVILSTQSTVDKVLHDGERVELGGTVLTAHLT-PGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKPKIAEDYKHSIKVLES--MRCDIFLGSHAGMFDLKN-TGCKNYIEQKANDFYTELKKQET. 262
37 -31.0002p97_A mol:protein length:201 Hypothetical protein  ali model follow..  15  6............................HRPDLYSWSTFNPARN---IDFNGFAWIRPEGNILIDPV---ALSNHDWKHLESLG-GVVWIVLT--NSDHVRSAKEIADQYTKIAGPVAEKENFPIY----CDRWLSDGDELVPG--LKVMELQGSKTPGELALLLEE-TTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVLAALEKVEAVLVGDGWSVFRDGRDRLKELVATL.............. 200
38 -30.8005iqk_A mol:protein length:271 beta-lactamase Rm3  ali model follow..  12  3............GCEVCATWNADQAPFRLFGNTYYV---------GMKGLSSVLVTSPQGHVLIDGG-LPESAPKIIANIGALGEDVKLILNSHGHIDHAGGLAELQRRNALVAASPSAALDLASGEVGPDDPQYDGGQFNVGPVYLTAHAT-PGHTPGGLSWTWQSCDGPRCLNMVYADSINAVSRPGPNALADLRHSFETLEK--LPCDVLISAHPEASQLWQ-QACRAYVAAARTLLDSRLDQEKQQ 271
39 -30.1005aeb_A mol:protein length:272 LRA-12  ali model follow..  11  18....................SKPYRPFRIAGNLYYI---------GTYDLACYLITTKQGNIIVNTGLAAS-ALQIKNNIKALGTDTKILLTTQAHYDHLGAMAEIKKIGAKLMADEGDATVMADGGIIADRLLHDKDTIQLGDTKLVMLHH-PGHTKGSCSFLFDTKDEQRSYRILIANMPTIVIEKKPGIAKDYAYTLQAMKN--LSFDIWVASHASQFSMHS-KGYDESLDKLQKEYEKHLNE.... 271
40 -29.0004ad9_A mol:protein length:289 BETA-LACTAMASE-LIKE PROTEIN 2  ali model follow..  17  8........................RVERLSNRVVRVLG-CNPGPMTLQGTNTYLVGTGPRRILIDTPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICKS-IKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVLYT-PGHTDDHMALLLEEENAIFSGDCILGEGTTVF-----EDLYDYMNSLKELLKI--KADIIYPGHGPVNAEAKIQQYISHRNIREQQILTLFRENFEK 235
41 -26.9001ztc_A mol:protein length:221 hypothetical protein TM0894  ali model follow..  13  29.................................................STVVYLEHKDRRIIIDPGNLSSMDELEFSELGISPDDITDVLFTHVHLDHIFNSVLFENATFYVHEVYIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHT-PWHAREHLSFLLDTENVLITGDITPNRLSYY-----DIIKGYGSVQVKNFLDRVGRIDLLVFPHD................................ 206
42 -26.9004v0h_A mol:protein length:266 METALLO-BETA-LACTAMASE DOMAIN-CONTAINING PROT  ali model follow..  16  40.....................ADGSVTLVLPQTRGPASSHRESPRGSGGAEAALEEAARGPILVDTGGPWAREALLLAGQGVAPGDVTLVVGTHGHSDHIGNLGLFPGAALLV-----SHDFCLPGGRYLPHGLGEGQPLRLGPG-LEVWAT-PGHGGQRDVSVVVAGTVVVAGDVFERDGDEDSWQALSEDPAAQERSRKRVLVV---ADVVVPGHGPP.............................. 234
43 -26.8002xf4_A mol:protein length:210 HYDROXYACYLGLUTATHIONE HYDROLASE  ali model follow..  16  11...............................................FSQNCSLIWCEQLAALVDPGGD---AEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHGVPVIGPEKEDEFWLQGQPLTPDRWLNDDRVSVGNVTLQVLHC-PGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDF-PRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQD............... 210
44 -26.5001qh3_A mol:protein length:260 PROTEIN (HYDROXYACYLGLUTATHIONE HYDROLASE)  ali model follow..  12  9...............................................LTDNYMYLVIDDEAAIVD----PVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLGLKVYGGDDRIGALTHK-------ITHLSTLQVGSLNVKCLAT-PCHTSGHICYFVSEPPAVFTGDTLFVA---GCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHNNLKFARHVEPGNAAIREKLAWAKEKYSIGEP. 209
45 -26.0001xm8_A mol:protein length:254 glyoxalase II  ali model follow..  15  9...............................................LKDNYAYILHDEDVGVVDPS----EAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRGAKVIGSAMDKDRIPGIDMALK----DGDKWMFAGHEVHVMDT-PGHTKGHISLYFPGSRAIFTGDTMFSL---SCGKLFEGTPKQMLASLQKITSL-PDDTSIYCGHSNSKFALSLEPNNEVLQSYAAHVAELRSKKLP. 205
46 -24.0005i0p_A mol:protein length:366 Beta-lactamase domain protein  ali model follow..  16  23........................DTFEVAPGVRWLR----PLPFSLDHINLWLL-GQAGWTIVDCGISSEAIRTHWEQIHLDGLPVLRVLVTHCHPDHFGLANWLCEGNVRLWMTAAAADHFARHGLTDPAAL-EGDAVKIGARTWRVVT-GYGHSPEHCALHSEADGVLISGDMVLPRISTNVSVFDLEPLALYLESLGRYETMAPD-TLVLPSHGKP--AQLRAHHDARLEEVRVACAEKPMSA... 307
47 -23.2004chl_A mol:protein length:238 PERSULFIDE DIOXYGENASE ETHE1, MITOCHONDRIAL  ali model follow..  17  28........................................................ESREAVLIDP----ETAPRDAQLIKELGLRLLYAVNTHCHADHITGSGLLRSL-----LPGCQSVISRLSGAQADLHIEDGDSIRFGRFALETRAS-PGHTPGCVTFVLNDHSMAFTGDALLIRGCGRTDF-QQGCAKTLYHSVHEKIFTLPGDCLIYPAHD................................ 180
48 -22.9002r2d_A mol:protein length:276 Zn-dependent hydrolases  ali model follow..  12  41...............................................IPVSAYLIQCTDATVLYDTGCHPECMGERLRQLGLSPDDISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATEAWLATPRNWDLVGRDERERELAPG-VNLLNFGTGHASGMLGLAVRLEKFLLVSDACYTATNYGPPARRAGDTIGYDRTVSHIRQYAESRSLVLFGHDREQFASLIKSTDGFYE................ 276
49 -22.7002p18_A mol:protein length:311 Glyoxalase II  ali model follow..  13  31...............................................LKDNFSYLINDHTLAAVDVNADYKPILTYIEENADVTYTFSTILSTHKHWDHSGGNAKLKAE-LEAMNSTVPVVVVGGANDSIPAVT-EGDRVQVGDLSVEVIDA-PCHTRGHVLYKVQHPQALFTGDTMFIA---GIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDGHSEKTFPDRASDDLAFIQAQRAKYAAAVKTGDP. 261
50 -22.3003dha_A mol:protein length:254 N-Acyl Homoserine Lactone Hydrolase  ali model follow..  11  2............RISMTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNNILKRVGYEPDDLLYIISSHLHFDHAGGNGAF--TNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVLLYTPGHSPGHQSLFIETEQVLLTIDASYTKENFEDEVPFAGDPELALSSIKRLKEVVKKEKIIFFGHDI............................... 241
51 -22.2002br6_A mol:protein length:252 AIIA-LIKE PROTEIN  ali model follow..  12  35...............................................LPVWCYLLETEEGPILVDTGMPESAVNNILKRVGYEPDDLLYIISSHLHFDHAGGNGAFT--NTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVLLYTPGHSPGHQSLFIKTEQVLLTIDASYTKENFEDEVPFAGDPELALSSIKRLKEVVKKEKIIFFGHDI............................... 239
52 -21.9004ysb_A mol:protein length:233 Metallo-beta-lactamase family protein  ali model follow..  19  22........................................................ATRQAVLIDPVLE--QVDRDLQMVAELDLTLTHVFDTHVHADHITASGALRERTQATVVGS------VNGASCANVQVRHGDEVRVGQLVFQVLAT-PGHTDDSISYLLGDR--VFTGDALLVRGNGRTDF-QNGNASQLYDSLTRVLFTLPDETLVYPGHD................................ 171
53 -21.7004fek_A mol:protein length:262 Putative diflavin flavoprotein A 5  ali model follow..  12  1...............MSDSKPRDVQVLPIATNTKVLRAFEIEYALERGTTSNSYVIEGDKTAIIDPPVESFMKIYLEALQQTVNKKLDYVILGHFSPNRIPTFKALLELQITFVCSLPAAGDLRADDNLNILPMRGKETLDLGGHVLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVFDDNWEMAPHAIHVEAALEKILQVRLYAVGHGPLVRTSLIALTQAYADWSKAQKLE........ 256
54 -21.5002gcu_A mol:protein length:245 Putative hydroxyacylglutathione hydrolase 3  ali model follow..  17  27.........................................................DKPALLIDP----KTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTK-----LPGVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRAT-PGHTAGCVTYVTPQPRMAFTGDAVLIRGCGRTDF-QEGSSDQLYESVHSQIFTLPKDTLIYPAHD................................ 184
55 -21.1003aj3_A mol:protein length:274 4-pyridoxolactonase  ali model follow..  12  2.....................SDTKVYLLDGGSLHVFWNRGPGGEVRFPVYSILIEHAEGRFLIDTGYDYDHVMK-LGLLGLEPRDIDVVVNSHFHFDHCGGNKYFPHAKKICHRSEEAAEARGATAQLLEGTTRANSTFEGIDGDVDLLISTPGHSIGHYSLLVEFPRILFTIDAAYTQKSTLCQAAFHIDPVAGVNSMRKVKKLAEDHGALMYSHDM............................... 254
56 -19.5004xuk_A mol:protein length:291 Putative hydrolase  ali model follow..  20  13......................DVQITALLDGTILKKYYADQEKGVQTSINAFLVNIGKSLILIDSGAASCFGSHLLKASGYQPEQVDTILLTHLHPDHVCGIANFPNATVYVSNDEKIKQAIAPYQAKQRFKTYKLGDDIQGFKVINT----AGHTPGHFSYELKTESIVFIGDIVHSHTVPETAIEYDIDPKKAVETRLKQFANFAKNGQTIPGIGHTYSAD.......................... 278
57 -19.2003esh_A mol:protein length:280 Protein similar to metal-dependent hydrolase  ali model follow..  6.......ISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSE-LANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHNAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNK-IKMQHSG-GHSFGHTIITIESDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKIPYFIQQQYWFLFYHDENYFAVKYSDDGENIDAY.............. 270
58 -18.8002q9u_A mol:protein length:414 A-type flavoprotein  ali model follow..  14  1................MSSKPKYVQDQEMIPGVY-VRIFHGYHTDEGSSYNSYFID-DECPTVIDSVKYPFAEEWLSRIAACCPDKIKYVVMNHAEGDHASSLKDHYHKNATFVCTKKCQEHLKI------LIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMHLFKEYTASTVEIKYILSAHGVSWRGDAMGLAIAEYDRWSK............ 251
59 -18.6002ohh_A mol:protein length:404 Type A flavoprotein fprA  ali model follow..  18  2......................KAAAKRISDGVYWTLRNYHGYTLQGTTYNAYLVCGDEGVALIDNGTFDELMARVEDALQQVGERVDYIIQNHVEKDHSGVLVELHRREAPIYCTEVAVKGLLKHYPSLREAEFTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYANLIRIQMIAPSHGQIMVDERVTVIYDTMHGSTRKMAHAIAEGAMS 283
60 -18.4001e5d_A mol:protein length:402 RUBREDOXIN:OXYGEN OXIDOREDUCTASE  ali model follow..  15  1.......................MQATKIIDGFHDFHGYTLSPMGTTYNA---YLVEDEKTTLFDTVKAEYKGELLCGIASVIDKKIDYLVIQHLELDHAGALPALIEAPEKIFTSSLGQKAMESH-----QVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLLKAIETLVGAGVAPEFICPDHGVI.............................. 229
61 -18.1004d02_A mol:protein length:479 ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDO  ali model follow..  12  3..........................IVVKNNIHVRDFHGTEYKTLRGSSYNSYLIREEKNVLIDTVDHKFSREFVQNLRNEIDADIDYIVINHAEEDHAGALTELMAQDTPIYCTANAIDSINGPEWNFNVVK-TGDTLDIGGKQLIFVETPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELTPKITEILGFNLPVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRI...... 250
62 -18.1001ycf_A mol:protein length:398 Nitric oxide reductase  ali model follow..  11  2........................QPVAITDGIYIRYFHGPAFSTHRGTTYNAYLIVDDKTALVDTVYEPFKEELIAKLKQIKDVKLDYLVVNHTESDHAGAFPAIMELDAHVLCTQRAFDSLKAH-----TIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYARWAEGQGKAKA...... 254
63 -17.9003r2u_A mol:protein length:466 Metallo-beta-lactamase family protein  ali model follow..  22  30.................................................SQASYLIGCQKAMIIDP---IRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKNANIYVSGESDDTLGYKNMPNHTHFVQHDDIYVGNIKLKVLHT-PGHTPESISFLLTDEGGLFSGDFIFVGKAVKVEGSSEIGAKQMFKSIESIKDL-PDYIQIWPGHGA............................... 215
64 -17.8004le6_A mol:protein length:324 Organophosphorus hydrolase  ali model follow..  18  1MRLFSLSTALSSAMIALVSLPLDFEVTALYDGYLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQCFGPTLLKASGYQPEQVDTVLLTHLHPDHACGLEFWLDEATMAKAPEGMQGMFKMAQQAVAPYAKMNKLKPYKTEGELLLVASPGHTPGHTSYLFKSQSLLVWGDILLNHAVPEVVFEFDVDSDQARQSRQRILAEAATDKLWVPGLGHVRKEA.......................... 307
65 -17.8004o98_A mol:protein length:337 organophosphorus hydrolase  ali model follow..  18  1MRLFSLSTALSSAMIALVSLPLDFEVTALYDGYLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQCFGPTLLKASGYQPEQVDTVLLTHLHPDHACGLEFWLDEATMAKAPEGMQGMFKMARQAVAPYAKMNKLKPYKTEGELLLVASSGHTPGHTSYLFKSQSLLVWGDILINHAVPEVVWEFDVDSDQARQSRQRILAEAATDKLWVPGLGHVREEA.......................... 307
66 -17.5004zo2_A mol:protein length:294 Acylhomoserine lactonase  ali model follow..  18  13......................ELELFILTDGYIILKDNFRADHYIDMAINILLVKTKEKLILMDTGMGIFADERTLQKAGFSAHDITDIFLSHAHPDHIGGKLVFPNASIFISKIENNSALKAHPERLNQIIPALQNILKAIQPKLKFYDLNPGHTPGLTVTTISSEKLMYVADLIHSDVIPDWGFSGDTDLDIATASRKKFLKQLADTKARAPGLGFTKVKA.......................... 282
67 -17.4003tp9_A mol:protein length:474 BETA-LACTAMASE and RHODANESE DOMAIN PROTEIN  ali model follow..  21  15.................................................AHASYLVGCQEACVIDP---ARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADRGAAICVSDEGPPEWKSEYVK--RLLKDGDELHFGNVRIVVMHT-PGHTPEHVSYLLYDGKALFSGDFVFVGRVAGESGSSEALARQMFRSLRKFEAL-PDHVQVLPAHGA............................... 201
68 -16.5004nur_A mol:protein length:633 PSdsA  ali model follow..  17  89.........................LFEVTDGIYQVRNYD---------SNMTIVEGKDGITIFDPLISQETAKAALDLYYKHKKPVVAVIYTHSHVDHYGGVRGVVDEAVKIYAPLGFLEHAVAETLIPPTDIIKEETHVIDGLTYEFMYAPGSEAPAEMLYYIKEKKALNAAEDS-THTLHNTYSLRGAKIRDWSKYLNEALKLWGDDVQVMPVWGNKEVREQLSLQRDMYRYINDETLRLANKGYT. 363
69 -16.4001vme_A mol:protein length:410 Flavoprotein  ali model follow..  17  12.......................TERIFDDPEIYIRYFEAVWEIPEGISYNAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDKEITHIIVNHTEPDHSGSLPATLKTDVEIIASNFGKRLLEGFYGIKDVTVVKDEEREIGGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGGGYLLPEILDDSNESIGHYKNYILEGAEKLLKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKK........ 259
70 -16.3002cfu_A mol:protein length:658 SDSA1  ali model follow..  14  107.........................LFEVAEGIYQVRGFD---------ANITFIRGDSGWIVVDTLTTPATARAAYELVSREERPIRTVIYSHAHADHFGGVRGLVEPQVQIIAPAGFMEAAIKESLLAPTRLIEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENV-VGTLHNLYTLRGAEVRDWSKYINQALHRFGRQAEVMPRWGNAEIVEVLEKQRDLYGYLHDQTLHLANQGVT. 381
71 -16.2004pdx_A mol:protein length:640 Putative alkyl/aryl-sulfatase YjcS  ali model follow..  15  89.........................LFKVTDKMYQVRGQD---------SNITFVEGEKGIIVIDPLVTPPAAKAALDLYFQHQKPIVAVIYTHSHTDHYGGVKGIISEAVQVIAPAGFMDEAISESIIAPTKTIVREKMIIDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTLHNFYTLRGARDTSKWTEYLNETLDMWGNDAEVLPVWGNKHINDYIGKYRDTIKYIHDQTLHLANQGYT. 363
72 -16.2001p9e_A mol:protein length:331 Methyl Parathion Hydrolase  ali model follow..  17  54......................DFEITALSDGTQSALAKSFQKAPLETSVTGYLVNTGSKLVLVDTGAAGLFGPTLLKAAGYQPEQVDEIYITHMHPDHVGGQLAFPNAVVRADQKEGAMASLNPYVKAGKFKPFSGNTDLVPGIKALAS---HGHTPGHTTYVVESQKLALLGDLILVAAVPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIPGIGHI.............................. 311
73 -16.1002qed_A mol:protein length:258 Hydroxyacylglutathione hydrolase  ali model follow..  17  16...............................................FQDNYIWVLTNDECVIVDPG----EAAPVLKAIAEHKWMPEAIFLT----DHVGGVKELLQHQMTVYGPAETQDKGATHLVG------DGDTIRVLGEKFTLFAT-PGHTLGHVCYFSRP--YLFCGDTLFSG---GCGRLFEGTPSQMYQSLMKINSL-PDDTLICCAHANIKFALSILPHDSFINEYYRKVKELRVKKQM. 204
74 -15.9002yhe_A mol:protein length:668 SEC-ALKYL SULFATASE  ali model follow..  14  117.........................LFEVMPKLYQVRGLD---------ANMTIIEGDSGLVLIDTLTTAETARAALDLYFQHKKPIVAVVYSHSHIDHFGGARGIIDEAVKVFAPSGFMEHAVSETLVAPNVLIEKERHTVDGVELEFQLTLGSEAPSDMNIYLPQFKVLNTADNA-PPAMHNLLTPRGAEVRDWAGYIDASLEKYGDRTDVLPVWGGDKVRTYLADQRDMYAFLNNRALNLMNKGLT. 392
75 -14.7004ysk_A mol:protein length:294 Beta-lactamase domain protein  ali model follow..  14  28........................................................ETRQCALIDSRTCSASADRLVERVNELNASVRWVLETHVHADHLSAAAYLKEKGAHITQVQKVFGALARDGSQFDVLLEDEEGFRIGNLQARALHT-PGHTPACMSFMIEDEIAVFVGDTLFMPDYGTA--FPGADARTLYRSIRRLLAFPDQTRLFM-CHDYLPGGRDMQYVTTVAEQRASNIH--IHQGIDE 243

FFAS is supported by the NIH grant R01-GM087218-01
1 0 1 3 2 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]