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Query: 1znb_A mol:protein length:232 METALLO-BETA-LACTAMASE, from PDB0516

Results of FFAS03 search in SCOP206
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AQKSVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGDYGGTELIEHTKQIVNQYIESTSKPLast
1 -101.000d1a7ta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]}  ali model 3D-neighbors follow..  97  1...SVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHGNYGGTELIEHTKQIVNQYIESTS.. 227
2 -95.900d4c1ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  33  2.TVIKNETGTISISQLNKNVWVHTELGSFNG-EAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGHGEVGDKGLLLHTLDLLK......... 222
3 -95.900d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}  ali model 3D-neighbors follow..  29  1.........DVKIEKLKDNLYVYTTYNTFNGTK-YAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSILAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQRSIQHTLDLINEYQQKQ... 219
4 -95.000d4hl2a1 d.157.1.0 (A:31-270) automated matches {Klebsiella pneumoniae [TaxId: 573]}  ali model 3D-neighbors follow..  29  9METGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGTFAANGWVEPATAPNFGP--LKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLR...... 240
5 -93.500d2ynta1 d.157.1.0 (A:37-295) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  33  2......GHKPLEVIKIEDGVYLHTSFKNIEGYGLVDSNGLVVLDNNQAYIIDTPWSEEDTKLLLSWATD-RGYQVMASISTHSHEDRTAGIKLLNSKSIPTYTSELTKKLLAREGKPVPTHYFKDD-EFTLGNGLIELYYPGAGHTEDNIVAWLPKSKILFGGCLVRSHEWEGLGYVGDASISSWADSIKNIVSKKYPIQMVVPGHGKVGSSDILDHTIDLAESASN..... 220
6 -89.100d4d1ta_ d.157.1.1 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  29  4PTVDDIPVGEVRLYKIGDGVWSHIATQKLGDTV-YSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGVDVLRAAGVATYTSPLTRQLAEAAGNEVPKALSSSGDVVRFGP--VEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYPEAEVVIPGHGLPGGLELLQHTTNVVKT........ 228
7 -82.500d2fhxa_ d.157.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  25  1..DHVDLPYNLTATKIDSDVFVVT------DRDFYSSNVLVAKMLDGVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLEENPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGYLG---DANVKAWPDSARRLKKF--DAKIVIPGHGEWGGPEMVNKTIKVAEKAVGEMR.. 244
8 -79.800d3ioga_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]}  ali model 3D-neighbors follow..  27  1........AGMSLTQVSGPVYVV------EDNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDLMKSDWLVLPNVVHDGDFTLQEGK--VRAFYAGPAHTPDGIFVYFPDEQVLYGGCILKEK----LGNLSFADVKAYPQTLERLKAMKLPIKTVIGGHDSPHGPELIDHYEALIKAAPQS.... 227
9 -35.300d2vw8a1 d.157.1.14 (A:1-298) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  19  27........................................LRLGEASWALVEGGISRD-AELVWADLCRADPSQVHYWLITHKHYDHCGLLPYLCPRNVQVLASERTCQAWKSESAALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALFDEAEGVWRPLVFDDMEAYLESLERLQRL-PTLLQLIPGHGGLRGRLAADGAESAYTECLRLCRR. 247
10 -34.400d2aioa_ d.157.1.1 (A:) automated matches {Stenotrophomonas maltophilia [TaxId: 40324]}  ali model 3D-neighbors follow..  12  10YTVDASWLQPMAPLQIADHTWQI---------GTEDLTALLVQTPDGAVLLDGG-MPQMASHLLDNMKARTPRDLRLILLSHAHADHAGPVAELKRRGAKVAANAESAVLLARGG-ANADRIVMDGEVITVGGIVFTAHFM-AGHTPGSTAWTWTDTRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRAL--PCDVLLTPHPGASNWDYAAGARAGAK......... 241
11 -33.800d3m8ta_ d.157.1.1 (A:) automated matches {Bradyrhizobium japonicum [TaxId: 224911]}  ali model 3D-neighbors follow..  17  4.......TAPFEPFQLIDNIYYV---------GTDGIAVYVIKTSQGLILMDTAMPQS-TGMIKDNIAKLKVADIKLILNTHAHLDHTGGFAEIKKEGAQLVAGERDKPLLEGGYYVKVDRAVKEGDRVTLGDTTLTAHAT-PGHSPGCTSWEMTVKDVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAM--KIDVLLGPHPEVYG..................... 216
12 -33.500d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}  ali model 3D-neighbors follow..  12  5...............HRPDLYSWSTFNPARN---IDFNGFAWIRPEGNILIDPV---ALSNHDWKHLESLGG--VVWIVLTN--SDHVRSAKEIADQYTKIAGPVAEKENFPIY----CDRWLSDGDELVPG---LKVMELQGSKTPGELALLLEE-TTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLLEKVEAVLVGDGWSVFRDGRDRLKELVATL....... 199
13 -32.300d5aeba_ d.157.1.0 (A:) automated matches {Uncultured bacterium [TaxId: 506514]}  ali model 3D-neighbors follow..  13  12.......SKPYRPFRIAGNLYYI---------GTYDLACYLITTKQGNIIVNTGLAAS-ALQIKNNIKALKLTDTKILLTTQAHYDHLGAMAEIKKIGAKLMADEGDATVMADGGSIIADRLLHDKDTIQLGDTKLVMLHH-PGHTKGSCSFLFDTKDEQRSYRILIANMPTIVIEKKPGIAKDYAYTLQAMKNL--SFDIWVASHASQFS..................... 226
14 -32.300d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}  ali model 3D-neighbors follow..  4.......PNPFPPFRIAGNLYYV---------GTDDLASYLIVTPRGNILINSDLEAN-VPMIKASIKKLKFSDTKILLISHAHFDHAAGSELIKQQKAKYMVMDEDVSVILSGG-STVDKVLHDGERVELGGTVLTAHLT-PGHTRGCTTWTMKLKDAVIIGSIGVNPGYKLVDNITPKIAEDYKHSIKVLESM--RCDIFLGSHAGMFD..................... 219
15 -32.200d4ax1b_ d.157.1.0 (B:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  17  5CADDAGWNDPAMPLKVYGNTWYV---------GTCGISALLVTSDAGHILVDAA-TPQAGPQILANIRALRPEDVRAIVFSHEHFDHAGSLAELQKAGAPVYARAPAIDTLKRGLPVANIVTLADDGVVSVGPLALTAVAS-PGHTPGGTSWTWRDCRQMVYADSLTAISDDVFRYSDDGYLAAFRNTLARVAAL--DCDILVTPHPSASG..................... 229
16 -26.700d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  12  1..........MELKILVTGGNVFVP----GRLNAHFSTVVYLEHKDRRIIIDPGNLSS-MDELEEKFSELGISPITDVLFTHVHLDHIFNSVLF--ENATFYVHEVYKTKNYLSFGTIVGRIYSKVIS-SLFDEKVKVFHT-PWHAREHLSFLLDTENVLITGDITPNRL-----SYYDIIKGYGSVQVKNFLDRVGRIDLLVFPHDAPLKPEV.................. 207
17 -26.200d2ohha1 d.157.1.0 (A:1-254) automated matches {Methanothermobacter thermautotrophicus [TaxId: 145262]}  ali model 3D-neighbors follow..  19  2.........KAAAKRISDGVYWTLRNYHGYTLQGTTYNAYLVCGDEGVALIDNGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRREAPIYCTEVAVKGLLKHYPSLREMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDALMDAARKFYANLITPLSKLVLKKFDEVKELLERIQMIAPSHGQI....................... 236
18 -26.200d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  9..................................LTDNYMYLVIDDEAAIVD----PVQPQKVVDAARKH-GVKLTTVLTTHHHWDHAGGNEKLVKLGLKVYGG--------DDRIGALTHKITHLSTLQVGSLNVKCLAT-PCHTSGHICYFVSKPGAVFTGDTLFVAG---CGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHNNLKFARHVEPGNAAIREKLAWAKE. 202
19 -25.200d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]}  ali model 3D-neighbors follow..  16  1...........QATKIIDGFHDFHGYTLSPMGTTYNA---YLVEDEKTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEAPEKIFTSSLGQKAMESHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLEKAIETLVGAGVAPEFICPDHGVI....................... 228
20 -25.200d2q9ua1 d.157.1.3 (A:4-253) Nitric oxide reductase N-terminal domain {Giardia intestinalis [TaxId: 5741]}  ali model 3D-neighbors follow..  15  5..........VQDQEMIPGVY-VRIFHGYHTDEGSSYNSYFID-DECPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKNATFVCTKKCQEHLKIGMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMKALEVASTV--EIKYILSAHGVSWRGDAMGLAIAEYDRWSK..... 248
21 -23.600d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  41.....................................NAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTDVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGLPHVTKYIVTVIGHYKNYILEGAEKLSSL--KIKALLPGHGLIWKKDPQRLLNHYVS......... 245
22 -21.700d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  16  9..................................FQDNYIWVLTNDECVIVD----PGEAAPVLKAIAEH-KWMPEAIFLTHHHHDHVGGVKELLQHQMTVYGP-------AETQDKGATHLVGDGDTIRVLGEKFTLFAT-PGHTLGHVCYFSRP--YLFCGDTLFSGG---CGRLFEGTPSQMYQSLMKINSL-PDDTLICCAHANIKFALSILPHDSFINEYYRKVKE. 194
23 -18.200d4le6a_ d.157.1.0 (A:) automated matches {Pseudomonas pseudoalcaligenes [TaxId: 330]}  ali model 3D-neighbors follow..  17  20.........DFEVTALYDGYLLARMFVASEKGVQTAVNAYLINTGDNLVLIDTGAAQPTLGVVQTNLKASGYQPVDTVLLTHLHPDHACGLEFWLDEATMAKAPEGMQGMFKMAQQAVAPYAKMNKLKPYKTEGEL-SLVASPGHTPGHTSYLFKSQSLLVWGDILLNHAVPEVVFEFDVDSDQARQSRQRILAEAATDKLWVPGLGHV....................... 279
24 -18.000d4zo2a_ d.157.1.0 (A:) automated matches {Chryseobacterium sp. [TaxId: 878220]}  ali model 3D-neighbors follow..  17  12.........ELELFILTDGYIILKDNFRADHYIDMAINILLVKTKEKLILMDTGMGIERTGFLLKSLQKAGFSAITDIFLSHAHPDHIGGV-FISKIEHDFWINASIKDFNNSALKAHPERLIQPKLKFYDLNKTLYNFQLAPGHTPGLTVTTISSEKLMYVADLIHSDVIPDWGFSGDTDLDIATASRKKFLKQLADTKARAPGLGFT....................... 277
25 -17.100d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  88............LFEVAEGIYQVRGFD---------ANITFIRGDSGWIVVDTLTTPATARAAYELVSRELERPIRTVIYSHAHADHFGGVRGLVEPQVQIIAPAGFMEAAIKENLLAPTRLIEGEEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENVVGTNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMPRWGNAEIVEVLEKQRDLYGYLHDQTLH. 355
26 -16.900d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  11  24....................................................................EDKDYQHTAVFLSHAHLDHS-RMINYLDPAVPLYTLKETKMILEEKNFTREMIGLNKNDVIKVGEISVEIVPVD--HDAYGLLIRTPDHFITYTGDLRLHGHNR-------EETLAFCEKAKHTELLMMEGVSI.............................. 165
27 -15.500d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  19  8..............................NVQEGGSDAIILESNGHFAMVDTGEDHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLST--NLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGSVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVTNKSNTKDFIKNLSPSLIVQTSDSLPWKNSEYVNWLKERGIERINAASK. 279
28 -12.000d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}  ali model 3D-neighbors follow..  4.....................TVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSG-----VLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQLPELPIYGHTFDENGFHSLTHHTKGIPYNPEETLQIGPFSISFLKTVHPVTCFAMRITAGNDIVVYSADSSYIPEFIPFTKDADLFICE--------CNMYAHQEAAKAGHMNSTEVASIAKDANVKELLLTHL... 212
29 -11.800d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  9..............................DDGSGTTVGSVVRFDNVTLLIDPGWNPSVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNRIQVYATLPVINLIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIISTYSEKLVYAKRW---------NHTRDNILNA--ATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSS. 240
30 -11.300d2i7va_ d.157.1.10 (A:) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  13..............................AGQEVGRSCIILEFKGRKIMLDCGIHPGLEGDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQK--RTFMTHATKAIVSNISADDMLYTETDHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDIIESTYGTHIHEKREEREARFCNTVHDIVNR--GGRGLIPVFALGRAQELLLILDEYWQNHPELHDIP 261
31 -11.000d3ieka_ d.157.1.10 (A:) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  8..............................AAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFREGYPVYATRATVLLMALKVMDEPFFGPEDGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDGTYGDRPHRPYRETVREFLEIKTLSQGGKVLIPTFA-------VERAQEILYVLYTHGHR. 241
32 -9.140d3jxpa1 d.157.1.6 (A:1-303) automated matches {Pseudomonas putida [TaxId: 160488]}  ali model 3D-neighbors follow..  12  40....................................SSIALSDDGVHWILCNA--SPDIRAQLQAF-RALRDTGINAIVLLDSQIDHTTGLLSLRECPHQVWCTDMVHQDLTTGGLQWNRIELEGSFVIDCPNLKFTPFPLREDTRTGGKLFYAPGLGLLVDGTLWEDDEMQRRGEMGHLAQNGPGGTLEVLDGFPRQRKVLI--H--------INNTNPILDENSPERAE. 286

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.