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Query: 1sml_A mol:protein length:269 PROTEIN (PENICILLINASE), from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AEVPLPQLRAYTVDASWLQPMAPLQIADHTWQIGTEDLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKALTCKAYADAAEQKFDGQLAKETAGARLast
1 -5.690 VFG013342(gi:30995400) (lpsA) glycosyltransferase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]  ali follow..  13......................PTFYLFGLLIMHNAAQHNYVISLTTE--------QKRRKHITEEFGKQNIPFEFFDAI-LSDGELSHIVLWDLALENNLNYINIFEDDIHLGENAKE-------------LEIDYISDDIHVLKLEANGKMFFKQPKSVKCDRNVYPMTVKQSGCAGYTVT----------------AKGAKYLLELVKNKPDVAVDSLVFEDFLHFKDYKIVQLSPGI----VQDFVLHPDNPFESSLQEGRDRVH 247
2 -5.440 VFG013321(gi:16272676) (lpxH) UDP-2,3-diacylglucosamine pyrophosphohydrolase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]  ali follow..  11  15.................TQPELTALFVDFMQNLAPQAERLYILGDLFDFWIGDDEQSALIQQVKDLIKFVSDQGVQCYFQ---HGNRDFLIG-ERFSKETGAQLLPDYQLITLYDKK-------------------ILLCHGDTLCIDDEAYQQFRRRVHQKWLQRLFLCLP---LKVRVIIAEKIRAKSNQDKQAKSQEIMDVNQAFTAEKVQEFGVNLLIHGHTHREAIHQQEEFTRIV............................ 212
3 -5.320 VFG001354(gi:15900810) (pce) choline binding protein E [CBPs (VF0145)] [Streptococcus pneumoniae TIGR4]  ali follow..  14  31...........................NKIHFINVQEGGSIILESNGHFAMVDTGEDVLTDRVFRRLKELGV--QKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKSERLWDNLYGYDKVLQTAAEKGVSVIQNITQGDAHFQFGDMDIQLYNY--DSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKF...................................................... 251
4 -5.300 VFG000701(gi:30962649) (bsc2) polysaccharide biosynthesis protein Bsc2 [Capsule (VF0043)] [Haemophilus influenzae str. 1007]  ali follow..  12  69.........................................LDALKEGVIFYPFNAQSNCRAV---------ANRNLTHIFITHGESNKITSVKPIVRIYDHVITAGNAGIDRLIAHK--------------------IFSQYDVEAGRIIPMGDTFIGKT--------GLDHTGKGIPAIFYVPTWEGGIEQENYSSLSYVGQVTNTLLLLSKH-INEIVIRPHPNTGHRLQNYH---------------QFLMDIVKTLLHKGLK.. 243
5 -5.130 VFG042214(gi:16420155) (steB) type III secretion system effector SteB [SPI-1 encoded T3SS (SS010)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  5........................................ICKHGAPFVVQHENRYGSGASQSSSLSKSIRHISNSHEEIKFISCYSANGACAQMLANASGRPVIGYYGKINKLTASLDNS.................................................................................................................................................... 88
6 -4.990 VFG045590(gi:52842834) (lpg2628) Dot/Icm type IV secretion system effector [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  17  53STGWLPSYLTYQLESRYPIVKRVNPNVKWVVVLGGGQNGVRLFRTLPDAKLLLSG-QSEALLLTELAKWFAIDSEKVPFYLVTSAI--HMPRSMALCQQQGLHPIAAPTD............................................................................................................................................................... 209
7 -4.880 VFG011510(gi:17986792) (lpsB/lpcC) Lipopolysaccharide core biosynthesis mannosyltransferase LpcC [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]  ali follow..  115.....................................FTKWLIRRMNAVIATSVRSGSFLEVPHQVIMH-GVDLERFKYAVGCFGRVRPSKGTDLFVDAM-IALLPKYPDWTAIVTGRTTAEYQAFEAELRTRIAAAGLQDGEVPDVRVWRLTLYVAPSRNEGFGLTPLEAMASKTAVVASDAGAYAEMVVEDTGRFVPAGDGRALTNAIEPYLA---------DPAMTKRCGENALAHVREAFPLQKEAAAISSVYEQVFAGR..... 354
8 -4.600 VFG007031(gi:28901169) (tdh) thermostable direct hemolysin A [TDH (VF0517)] [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  15.............................................................SMLAAFKTFAFELPSVPF---APGSDEILFVVRDTTFNTNAPVNVEVSDFWTNRNVKRKPYKDVYGQSVFTTSGTKWLTSYMTVNINDKDYTMAAVSGYKHGHSAVFVKSDQVQLQHSYDSVANFVGEDEDSIPSKMYLDETPEYFVNVEAYESGSGNILV............................................... 173
9 -4.540 VFG001947(gi:15792471) (waaV) glucosyltransferase [LOS (VF0326)] [Campylobacter jejuni subsp. jejuni NCTC 11168]  ali follow..  10  1....................MPQLSIIIPLFNSCNF-LQSCINQTLKDILIIDDKSKDNSLNMVLEFAK-----KDPRIKIFQNEENLGTFASRNVLHSSSDFIMFLDSD............................................................................................................................................................... 92
10 -4.420 VFG000341(gi:16272221) (hxuB) heme-hemopexin utilization protein B HxuB, two-partner secretion (TPS) pathway TpsB outer membrane pore-forming translocator protein [HxuABC (VF0269)] [Haemophilus influenzae Rd KW20]  ali follow..  10  55FNQTANSPYTAQYKQGLKFPLKQVQILDRNNQEVVTDELAHILKNYVGKEVSLSDLSNLANEISEFYRHNNYLVA--KAILPPQ---EIEQGTVKIL------LLKGNVGEIRLQNHSALSNKFVSRLSNTTVNASEFILKDEL-DVPGVNAGLQLSAGKKVGEANLLIKINDAKRFSSYVSVDNQGNKYTGRYRLAA----------KVSNLNGWGDELKLDLMSSNQANLKNARIDYSSLIDGYSTRFGVTANYLDYKLGGNFKS.. 309

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Li W, Godzik A. VISSA: a program to visualize structural features from structure sequence alignment. Bioinformatics. 2006 Apr 1;22(7):887-8. Epub 2006 Jan 24.