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Query: 5a5z_A mol:protein length:251 BETA-LACTAMASE NDM-1, from PDB0516

Results of FFAS03 search in VFDB
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGEIRPTIGQQMETGDQRFGDLVFRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDADTEHYAASARAFGAAFPKASMIVMSHSAPDSRAAITHTARMADKLRLELast
1 -6.520 VFG001798(gi:57650692) (hlb) beta-hemolysin [  ali follow..  10  20NLLLVGALTDNSAKAESKKDDTDLKLVSHNVYMLSTVLYPNWGQYKRADLISYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVY---TKIEKNGKNVHVIGT-HTQSEISDFVKKKNVYIGGDL---------------NVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQ............... 261
2 -6.310 VFG001864(gi:52841028) (mip) macrophage infectivity potentiator Mip [Mip (VF0153)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  11  10AAVMGLAMSTAMAATDATSLATDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEAFLTEPGVVVLPSGLQYKVINSGN--------------------------------GVKPGKSDTV------TVEYTGRLI--------GTVFDSTIPGWTEALQ-LMPAGSTWEIYVPAYGPRSVGGPIGPNETLIFKIH.. 227
3 -5.410 VFG000674(gi:6006577) (smcL) sphingomyelinase-c [SMase (VF0061)] [Listeria ivanovii str. ATCC 19119]  ali follow..  14  22FFTFLFGHYGELKTQASDEYPGNFKITSHNVYIYPNWGQMHRADLIAQ--ADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQTPVIGRSKHGWDKTEGNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAY---VKIMKNGKPYHIIGT-HTPAEIQTFIAKKNIFIGGDL............................................................... 230
4 -5.340 VFG013321(gi:16272676) (lpxH) UDP-2,3-diacylglucosamine pyrophosphohydrolase [LOS (CVF494)] [Haemophilus influenzae Rd KW20]  ali follow..  10  8...................SDLHLSETQPEL--TALFVDFMQNLAPQAERLYILGDLFDFWIGDDEQSALIQQVKDLIKFVSDQGVQ-CYFQHGNRDFLIGERFSKETGAQLLPDYQLITL----------------------------YDKKILLCHGDTLCIDDLFLCLPLKVRVIIAEKIRAKSNQDKQAKSQEIMDVNQAFTAEKVQEF-GVNLLIHGHTHREAIHQQEEFTRIV...... 212
5 -5.010 VFG002104(gi:52840879) (wipB) Dot/Icm type IV secretion system effector WipB [Dot/Icm (VF0156)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]  ali follow..  10  1.............................................................MKTQRIIHPNIDIRKFPEVNTDFSMTDISMGDLHANALLFLNILVRQGIIAISPENYAKFAEIYTLPELQADYWGTEAPVFSAENKQ--ERLEEIKKQYNALIAQIKIINTKKLIRLIGDELVDRGVIDYFIL---------KLLQALYDQGADFEILLSNHG..................... 152
6 -5.000 VFG001386(gi:15607897) (phoP) Possible two component system response transcriptional positive regulator PhoP [PhoP (VF0286)] [Mycobacterium tuberculosis H37Rv]  ali follow..  27..................DDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFGVLRRLRADIDAPALFLTARDSLQDKIAGLTLGGDDYVT-FSLEEVVARLRVILRRAGKGNKEPRNVRLTFADIELDEETHEVWKAGQSPTEFTLLRYFNAGTVLSKPKIL--DHVWRYDFGGDVNVVEYVSYLRKIDTGEKRLLHTLRGVG..................... 240
7 -4.920 VFG002420(gi:21281752) (adsA) Adenosine synthase A [AdsA (VF0422)] [Streptococcus pyogenes MGAS315]  ali follow..  10  126LSNAKTASLSPRMFAANVPQTTTHKILHTNDIHGRLAEEKGRVIGMAKLKTVKEQEKPDLMLDAG-DAFQGLPLSNQSK---GEEMAKAMNAVGYDAMAVGNHEFD------FGYDQLKKLEGMLDFPMLSTNVYKDGKRAFKPSTIVTKNGIRYGIIG---TPETKTKTRPEKGVEFRDPLQSVTAISHLGIDPSTQETWRGDYLVKQNPQLKKRITVIDGHGQIYNNDALVQTGTALANI... 382
8 -4.850 VFG033025(gi:16802459) (pdgA) Peptidoglycan N-deacetylase [PgdA (VF0442)] [Listeria monocytogenes EGD-e]  ali follow..  10  269..........................................................ALTFDDGPSSSVTPGVLDTLKRHNVKATFFVLGSSLEEGHQVGSHSWDHPQLTKQSTQEVYNQILKTQKAVFDQTGYFP----------------TTMRPPYGAVNKQVAEEIGLPIIQW-----------------SVDTEDWKIVTKKVLAGATDGAIVL--HD----KTTAASLDTTLTKLKSQ 435
9 -4.840 VFG002552(gi:53720402) (wcbN) D-glycero-d-manno-heptose 1,7-bisphosphate phosphatase [Capsule I (VF0436)] [Burkholderia pseudomallei K96243]  ali follow..  13  2...............................................KNRALFLDRDGVINRDDGYVFEIEKGIFELAGAAKALGYLSIVVTNQAG---IGRGYYSEDDFFRL-SDWMKGVFATEGAP------------------------IDGVYFCPTHPEHGIGRYKVESRF--PGMILAAQHDFDLDLGASLLVGDKESDIQAGSTAGVGTTLLICDRDASRVATAASAVVRNPRDVIP. 177
10 -4.700 VFG011510(gi:17986792) (lpsB/lpcC) Lipopolysaccharide core biosynthesis mannosyltransferase LpcC [LPS (CVF383)] [Brucella melitensis bv. 1 str. 16M]  ali follow..  77........................................................................................IWHARRNIEMLAGIFMRDVLRMKLRLVFTSAAQRHHKPFTKWLIRRMNAVIATSVRSGSFLEVPHQVIMHG------DLERFHPPLAVGCFGRVRPSKGTDLF-----------VDAMIALLPKYPDWTAIVTGRTTAEYQAFEAELRTRIAAA... 229

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Alexey M. Eroshkin, Andrew LeBlanc, Dana Weekes, Kai Post, Zhanwen Li, Akhil Rajput, Sal T. Butera, Dennis R. Burton, Adam Godzik. bNAber: database of broadly neutralizing HIV antibodies. Nucl. Acids Res. 2013; published on November 7, 2013.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.